Clone BS28789 Report

Search the DGRC for BS28789

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG13000-RA
Protein status:BS28789.pep: full length peptide match
Sequenced Size:365

Clone Sequence Records

BS28789.complete Sequence

365 bp assembled on 2012-03-26

GenBank Submission: KX802101

> BS28789.complete
GAAGTTATCAGTCGACATGTCCATTAGCCTCTCTGAATTCTACCAATCCT
CACTGACTTTCTGGAGCCATCTGATCCATATACTGCTGCAGTTCATCCAG
ACCAACTGCTGGAATCACATCACACAGAAGGAGCAGCAGCAAGAGGAACT
CAACGAACCCTGTGCCATCTCAAAAACCATGGACGCCTTCGTGGAGGAGC
AGCAAAAGCGGGTGCAACGAAAATCCCACGAGTACGCCAAAGTGGAGCTA
CTGCATCGCCTGCTTGTCCAGCAGCAACTGCAGGAACTGGAGCAGCGCCG
ACTCATCCGATTGGCTCTGGCCAGGAGGCGACTGGACTACTCCAATTAGA
AGCTTTCTAGACCAT

BS28789.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13000-RA 333 CG13000-PA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13000-RA 508 CG13000-RA 27..365 12..350 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16948107..16948445 350..12 1695 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:19:14 has no hits.

BS28789.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:15:03 Download gff for BS28789.complete
Subject Subject Range Query Range Percent Splice Strand
CG13000-RA 1..333 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:28 Download gff for BS28789.complete
Subject Subject Range Query Range Percent Splice Strand
CG13000-RA 32..364 17..349 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:30 Download gff for BS28789.complete
Subject Subject Range Query Range Percent Splice Strand
CG13000-RA 32..364 17..349 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:30 Download gff for BS28789.complete
Subject Subject Range Query Range Percent Splice Strand
X 16948108..16948440 17..349 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:28 Download gff for BS28789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16842141..16842473 17..349 100   Minus

BS28789.pep Sequence

Translation from 16 to 348

> BS28789.pep
MSISLSEFYQSSLTFWSHLIHILLQFIQTNCWNHITQKEQQQEELNEPCA
ISKTMDAFVEEQQKRVQRKSHEYAKVELLHRLLVQQQLQELEQRRLIRLA
LARRRLDYSN*

BS28789.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13000-PA 110 CG13000-PA 1..110 1..110 562 100 Plus