BS28792.complete Sequence
854 bp assembled on 2012-03-26
GenBank Submission: KX802231
> BS28792.complete
GAAGTTATCAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGG
GCGTGGTCCTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGA
AAGAGGGGGCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCT
TAGGATGCGCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGC
TGCTCATCTACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGC
GGCAGCAACCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGA
GTGCGACGTGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGT
GGGATCCATGCAAATGTTGCCGCATATGCGCCAAAACTTTGGGCGAATCC
TGCGGCGGTCCGGGCGGATTTTCCGGTCAATGTGAGCCGCCCCTGCAGTG
TGTGACCAAGCTGCCCATTAGCAGCGGATTGGGCGTGTGCATGGATTTGC
AGCACCTGACCGCCCTGACCTACAGTCAGCACGATAATTGTTCCGACAGC
GATTCGATTGTTTTGGAGCCGGGCTGCGAGATCACCAACAAACGCTGCCA
GTGCTGGCCAACTATGCGCACCTGTCTCAGCGAACTGACCAGCGATGGGG
GATCCCCCGACGACTCTCGCTGGCACTTCAAGAACCTAGAGGACTGCCAG
TTGAATCTACAAAATCTAATAAAACTCGAACAGGAATTCGATGAAGACTA
CAAAATCTCACCGAGCAAATTCACATACAAAAAACTACGCAGAAAGCGAA
AATCTTTAAAGAAACGAATCATCATCTTGAAGGATTGAAAGCTTTCTAGA
CCAT
BS28792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-RD | 822 | CG13253-PD | 1..822 | 17..838 | 4110 | 100 | Plus |
cmpy-RC | 822 | CG13253-PC | 1..822 | 17..838 | 4110 | 100 | Plus |
cmpy-RB | 351 | CG13253-PB | 1..347 | 17..363 | 1735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-RD | 1638 | CG13253-RD | 373..1194 | 17..838 | 4110 | 100 | Plus |
cmpy-RC | 1622 | CG13253-RC | 357..1178 | 17..838 | 4110 | 100 | Plus |
cmpy-RB | 2737 | CG13253-RB | 1815..2293 | 360..838 | 2380 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20716799..20717145 | 363..17 | 1735 | 100 | Minus |
3L | 28110227 | 3L | 20713680..20713878 | 692..494 | 995 | 100 | Minus |
3L | 28110227 | 3L | 20715553..20715687 | 494..360 | 660 | 99.3 | Minus |
3L | 28110227 | 3L | 20713484..20713613 | 819..690 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:19:50 has no hits.
BS28792.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 12:48:17 Download gff for
BS28792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-RC | 355..1175 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:52 Download gff for
BS28792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RC | 357..1177 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:48 Download gff for
BS28792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RC | 357..1177 | 17..837 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:48 Download gff for
BS28792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20715553..20715683 | 364..494 | 100 | <- | Minus |
3L | 20713283..20713300 | 820..837 | 100 | <- | Minus |
3L | 20713484..20713611 | 692..819 | 100 | <- | Minus |
3L | 20713681..20713877 | 495..691 | 100 | <- | Minus |
3L | 20716799..20717145 | 17..363 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:52 Download gff for
BS28792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20706584..20706711 | 692..819 | 100 | <- | Minus |
arm_3L | 20706781..20706977 | 495..691 | 100 | <- | Minus |
arm_3L | 20708653..20708783 | 364..494 | 100 | <- | Minus |
arm_3L | 20706383..20706400 | 820..837 | 100 | <- | Minus |
arm_3L | 20709899..20710245 | 17..363 | 100 | | Minus |
BS28792.pep Sequence
Translation from 16 to 837
> BS28792.pep
MGGSARGVGRRGVVLEQDVRTRSSQGERKRGLAGKQQHNNAKLPLRMRSN
GSYFGRLNVSALLIYLWCYLLLVMAASGGSNHVVNGLKCYCNPKECDVIR
SPDCPGKGLMLWDPCKCCRICAKTLGESCGGPGGFSGQCEPPLQCVTKLP
ISSGLGVCMDLQHLTALTYSQHDNCSDSDSIVLEPGCEITNKRCQCWPTM
RTCLSELTSDGGSPDDSRWHFKNLEDCQLNLQNLIKLEQEFDEDYKISPS
KFTYKKLRRKRKSLKKRIIILKD*
BS28792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-PD | 273 | CG13253-PD | 1..273 | 1..273 | 1491 | 100 | Plus |
cmpy-PC | 273 | CG13253-PC | 1..273 | 1..273 | 1491 | 100 | Plus |
cmpy-PB | 116 | CG13253-PB | 1..116 | 1..116 | 627 | 100 | Plus |