Clone BS28793 Report

Search the DGRC for BS28793

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG40298-RA
Protein status:BS28793.pep: full length peptide match
Sequenced Size:1112

Clone Sequence Records

BS28793.complete Sequence

1112 bp assembled on 2012-03-26

GenBank Submission: KX801519

> BS28793.complete
GAAGTTATCAGTCGACATGAATTGGCGTAGTTTTATTGTTACTTTAATAA
ACTGCATAGTCTGGTCAATACAAGTTATTCAATTAAATGGTACTGGAATT
AAAAACCTAGGAAGAACAAGAGACTCTTTTAGAGCGGTACAAGTACCCCA
ACAGTTTTATGATGCTATCGAACAGTCAGATTTCAGTAAACATAGTTTAC
AAAATAAGTTAGAGCATTTCCTTGAAAAACTTCAAAAAAACTTGACCATA
TCGGCAGTATTGAGTGACTCCGAAGATATTGTCACAAGTGAAAGAAACTA
TGTTTACAAGATGCGAGAACTATCAACCTTCTTTTATGAAGCTTCTTTTT
CTTTCGAACAATTTTCTTCTGATATCCAAACTTTTTATGAAACATCAAAA
AATGCAAGCTACGCACTTTTGTTTAAACTACGCCAAGTCCCAACAGGTCA
ACCAACTCTAGTAAAGGCTTTACTCACAAACTATTTTGCGGAAATAGAAT
TCTTTCATGTGTTGTTTTCAGAAATTATCGATGATGCTATGGAATATAGT
ACTAAATCCCTAAAATGGATTCAAGAACTATTTGTTTATTATGCTGATAC
TCAAAATAATATTCTAGAAAATTGGAAATTGAAGACAAATCTTGAATGCT
GCAAACTTTATGTCAACTTCTTACAGGATCAGTCCTCTCAGATTTTTAAA
TGCGCTACTGTGGATAATCTTAATATAATATACGATGTGTATTCCGTAAC
GAAGCTTAACATAAAATATATACTAAGGCAACTTGAGTTTCGCATCCAAC
GATTATTCAATTGTTTATTGTATAACAGCCCTAACATACAATGTAAGCTT
CTTAAAAGAGCAGAGAAAGATCTTAAAACCTTATTTAGAAATCTCTCCGA
GCTAGACATGTTCATCGATATAAAAACTAAAAAAGGCAAAGCAGCCGCAT
TAAGATTTCGTCGAGGAAACACATGGAACAGCAATCAAATTAAATTGGAA
CCGAACCAGAACTACTGCCTTCCAATTGGCTTTCCAAATACTCAAATGTC
AACAGATCTAAAAGAATGCTTTTACTTTTTAGATAATATAGTGTAAAAGC
TTTCTAGACCAT

BS28793.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG40298-RA 1080 CG40298-PA 1..1080 17..1096 5400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG40298-RA 1161 CG40298-RA 39..1118 17..1096 5400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23726867..23727946 17..1096 5400 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:20:12 has no hits.

BS28793.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 14:32:03 Download gff for BS28793.complete
Subject Subject Range Query Range Percent Splice Strand
CG40298-RA 1..1078 17..1094 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:06 Download gff for BS28793.complete
Subject Subject Range Query Range Percent Splice Strand
CG40298-RA 39..1116 17..1094 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:57 Download gff for BS28793.complete
Subject Subject Range Query Range Percent Splice Strand
CG40298-RA 39..1116 17..1094 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:57 Download gff for BS28793.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23726867..23727944 17..1094 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:06 Download gff for BS28793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23719967..23721044 17..1094 100   Plus

BS28793.pep Sequence

Translation from 16 to 1095

> BS28793.pep
MNWRSFIVTLINCIVWSIQVIQLNGTGIKNLGRTRDSFRAVQVPQQFYDA
IEQSDFSKHSLQNKLEHFLEKLQKNLTISAVLSDSEDIVTSERNYVYKMR
ELSTFFYEASFSFEQFSSDIQTFYETSKNASYALLFKLRQVPTGQPTLVK
ALLTNYFAEIEFFHVLFSEIIDDAMEYSTKSLKWIQELFVYYADTQNNIL
ENWKLKTNLECCKLYVNFLQDQSSQIFKCATVDNLNIIYDVYSVTKLNIK
YILRQLEFRIQRLFNCLLYNSPNIQCKLLKRAEKDLKTLFRNLSELDMFI
DIKTKKGKAAALRFRRGNTWNSNQIKLEPNQNYCLPIGFPNTQMSTDLKE
CFYFLDNIV*

BS28793.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG40298-PA 359 CG40298-PA 1..359 1..359 1865 100 Plus