Clone BS28794 Report

Search the DGRC for BS28794

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptSp7-RB
Protein status:BS28794.pep: full length peptide match
Sequenced Size:758

Clone Sequence Records

BS28794.complete Sequence

758 bp assembled on 2012-03-26

GenBank Submission: KX805324

> BS28794.complete
GAAGTTATCAGTCGACATGGCACTGCTTGAGTACGTGGATAACAGGGGAC
GGCGGGAACTCAGTTGCGGTGGCAGTTTGATCAACAATCGTTACGTTCTT
ACCGCCGCCCATTGCGTCATTGGTGCGGTGGAAACGGAAGTAGGTCACCT
AACTACCGTTCGGTTGGGGGAATACGATACCAGCAAGGACGTGGACTGCA
TAGATGACATTTGCAACCAGCCCATCCTACAATTGGGCATCGAACAGGCC
ACTGTACATCCCCAATATGATCCTGCCAACAAGAACCGCATTCACGACAT
TGCCTTATTGCGATTAGATCGGCCCGTTGTGCTTAATGAGTATATTCAGC
CGGTTTGTTTGCCTTTGGTAAGCACACGAATGGCAATCAATACCGGGGAG
CTCTTGGTGGTCAGCGGGTGGGGCCGAACCACAACAGCCCGCAAGAGCAC
CATAAAGCAGCGATTGGATCTGCCGGTGAATGACCACGATTACTGCGCAC
GAAAGTTCGCCACGAGGAATATCCACCTGATCAGTTCCCAGCTCTGTGTT
GGCGGGGAATTCTACCGCGACAGCTGTGATGGCGACTCCGGCGGACCGCT
GATGCGAAGGGGTTTTGACCAGGCTTGGTACCAGGAGGGCGTGGTCTCCT
TTGGCAACCGCTGCGGACTAGAGGGTTGGCCAGGTGTCTACACTCGGGTA
GCCGACTACATGGACTGGATCGTGGAGACCATTCGTCCCTGAAAGCTTTC
TAGACCAT

BS28794.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1176 CG3066-PF 451..1176 17..742 3630 100 Plus
Sp7-RE 1176 CG3066-PE 451..1176 17..742 3630 100 Plus
Sp7-RA 1176 CG3066-PA 451..1176 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1565 CG3066-RF 606..1331 17..742 3630 100 Plus
Sp7-RE 1418 CG3066-RE 606..1331 17..742 3630 100 Plus
Sp7-RA 1851 CG3066-RA 1039..1764 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7763033..7763339 436..742 1535 100 Plus
3R 32079331 3R 7762635..7762921 151..437 1435 100 Plus
3R 32079331 3R 7762457..7762565 42..150 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:18:58 has no hits.

BS28794.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:15:01 Download gff for BS28794.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RC 1127..1851 17..741 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:18 Download gff for BS28794.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 1039..1763 17..741 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:23 Download gff for BS28794.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 1039..1763 17..741 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:23 Download gff for BS28794.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7762369..7762393 17..41 100 -> Plus
3R 7762457..7762565 42..150 100 -> Plus
3R 7762635..7762921 151..437 100 -> Plus
3R 7763035..7763338 438..741 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:18 Download gff for BS28794.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3588091..3588115 17..41 100 -> Plus
arm_3R 3588179..3588287 42..150 100 -> Plus
arm_3R 3588357..3588643 151..437 100 -> Plus
arm_3R 3588757..3589060 438..741 100   Plus

BS28794.pep Sequence

Translation from 16 to 741

> BS28794.pep
MALLEYVDNRGRRELSCGGSLINNRYVLTAAHCVIGAVETEVGHLTTVRL
GEYDTSKDVDCIDDICNQPILQLGIEQATVHPQYDPANKNRIHDIALLRL
DRPVVLNEYIQPVCLPLVSTRMAINTGELLVVSGWGRTTTARKSTIKQRL
DLPVNDHDYCARKFATRNIHLISSQLCVGGEFYRDSCDGDSGGPLMRRGF
DQAWYQEGVVSFGNRCGLEGWPGVYTRVADYMDWIVETIRP*

BS28794.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-PF 391 CG3066-PF 151..391 1..241 1294 100 Plus
Sp7-PE 391 CG3066-PE 151..391 1..241 1294 100 Plus
Sp7-PA 391 CG3066-PA 151..391 1..241 1294 100 Plus
CG9733-PB 417 CG9733-PB 175..416 1..240 578 46.9 Plus
CG9733-PA 418 CG9733-PA 176..417 1..240 578 46.9 Plus