BS28794.complete Sequence
758 bp assembled on 2012-03-26
GenBank Submission: KX805324
> BS28794.complete
GAAGTTATCAGTCGACATGGCACTGCTTGAGTACGTGGATAACAGGGGAC
GGCGGGAACTCAGTTGCGGTGGCAGTTTGATCAACAATCGTTACGTTCTT
ACCGCCGCCCATTGCGTCATTGGTGCGGTGGAAACGGAAGTAGGTCACCT
AACTACCGTTCGGTTGGGGGAATACGATACCAGCAAGGACGTGGACTGCA
TAGATGACATTTGCAACCAGCCCATCCTACAATTGGGCATCGAACAGGCC
ACTGTACATCCCCAATATGATCCTGCCAACAAGAACCGCATTCACGACAT
TGCCTTATTGCGATTAGATCGGCCCGTTGTGCTTAATGAGTATATTCAGC
CGGTTTGTTTGCCTTTGGTAAGCACACGAATGGCAATCAATACCGGGGAG
CTCTTGGTGGTCAGCGGGTGGGGCCGAACCACAACAGCCCGCAAGAGCAC
CATAAAGCAGCGATTGGATCTGCCGGTGAATGACCACGATTACTGCGCAC
GAAAGTTCGCCACGAGGAATATCCACCTGATCAGTTCCCAGCTCTGTGTT
GGCGGGGAATTCTACCGCGACAGCTGTGATGGCGACTCCGGCGGACCGCT
GATGCGAAGGGGTTTTGACCAGGCTTGGTACCAGGAGGGCGTGGTCTCCT
TTGGCAACCGCTGCGGACTAGAGGGTTGGCCAGGTGTCTACACTCGGGTA
GCCGACTACATGGACTGGATCGTGGAGACCATTCGTCCCTGAAAGCTTTC
TAGACCAT
BS28794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-RF | 1176 | CG3066-PF | 451..1176 | 17..742 | 3630 | 100 | Plus |
Sp7-RE | 1176 | CG3066-PE | 451..1176 | 17..742 | 3630 | 100 | Plus |
Sp7-RA | 1176 | CG3066-PA | 451..1176 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-RF | 1565 | CG3066-RF | 606..1331 | 17..742 | 3630 | 100 | Plus |
Sp7-RE | 1418 | CG3066-RE | 606..1331 | 17..742 | 3630 | 100 | Plus |
Sp7-RA | 1851 | CG3066-RA | 1039..1764 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7763033..7763339 | 436..742 | 1535 | 100 | Plus |
3R | 32079331 | 3R | 7762635..7762921 | 151..437 | 1435 | 100 | Plus |
3R | 32079331 | 3R | 7762457..7762565 | 42..150 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:18:58 has no hits.
BS28794.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:15:01 Download gff for
BS28794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RC | 1127..1851 | 17..741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:18 Download gff for
BS28794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 1039..1763 | 17..741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:23 Download gff for
BS28794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 1039..1763 | 17..741 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:23 Download gff for
BS28794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7762369..7762393 | 17..41 | 100 | -> | Plus |
3R | 7762457..7762565 | 42..150 | 100 | -> | Plus |
3R | 7762635..7762921 | 151..437 | 100 | -> | Plus |
3R | 7763035..7763338 | 438..741 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:18 Download gff for
BS28794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3588091..3588115 | 17..41 | 100 | -> | Plus |
arm_3R | 3588179..3588287 | 42..150 | 100 | -> | Plus |
arm_3R | 3588357..3588643 | 151..437 | 100 | -> | Plus |
arm_3R | 3588757..3589060 | 438..741 | 100 | | Plus |
BS28794.pep Sequence
Translation from 16 to 741
> BS28794.pep
MALLEYVDNRGRRELSCGGSLINNRYVLTAAHCVIGAVETEVGHLTTVRL
GEYDTSKDVDCIDDICNQPILQLGIEQATVHPQYDPANKNRIHDIALLRL
DRPVVLNEYIQPVCLPLVSTRMAINTGELLVVSGWGRTTTARKSTIKQRL
DLPVNDHDYCARKFATRNIHLISSQLCVGGEFYRDSCDGDSGGPLMRRGF
DQAWYQEGVVSFGNRCGLEGWPGVYTRVADYMDWIVETIRP*
BS28794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-PF | 391 | CG3066-PF | 151..391 | 1..241 | 1294 | 100 | Plus |
Sp7-PE | 391 | CG3066-PE | 151..391 | 1..241 | 1294 | 100 | Plus |
Sp7-PA | 391 | CG3066-PA | 151..391 | 1..241 | 1294 | 100 | Plus |
CG9733-PB | 417 | CG9733-PB | 175..416 | 1..240 | 578 | 46.9 | Plus |
CG9733-PA | 418 | CG9733-PA | 176..417 | 1..240 | 578 | 46.9 | Plus |