BS28795.complete Sequence
2156 bp assembled on 2012-04-06
GenBank Submission: KX805672
> BS28795.complete
GAAGTTATCAGTCGACATGACCTCTCGCAAGCGCAGTGGCAGCGGCTCCA
CCAAGCGGCCCAAGGAGAAGGTGGTCTATATATATGAGCTGTTGTGCCGG
GGCGAGGATCCCAGCAGCGAGAGTCCCGAATTTTGGAACGAGTTCTTCCT
GCTGCAGCCGAACTTCGAGGCGCTGGAGAATGAGATTGGCAAACTCAACA
ACGAGCAGCTGCAGCTGGTGAAACCGAACCTGAACACCCTCTTCCAGAGG
TGCATCGAAATGCTTGACACGGAAGATCATCCTAAGCGGCTGTGCAACAG
CCTACACACGCTGTGCTCCCTGTTCTACGGGATCTTTAAGAAGTCCAACG
CAGAACCAACATTAAACATCCTAAACGAGATCTTCGGCCATGAGAAGATG
GACGAATGGCTGAAGCTACTCATGCAGTACTGCAATCGCATCCTCCTGGG
CGATGTGCCCGAAAACGCTCGATTTATGTGCCTCAAACTGCTGCAGGTTC
TGGTTACGGGCACGGATAACGTCAACCAGAACGCCCTCTTCGAGCATCTA
ATGATGCACAGCATGTTCGACGCCTTTGTTCGGCTACTCAGTGATCCTAC
GTTCCGTAGCCAGCATGGACACGACATCGTTATCCTACTTACTATCCTGG
TCAACTATCGCAAGCATGAAGCCACTAACCCCTATGTGGTGCAGCTCTCC
ATACTCGCTGATGAGCTGGCTTTAAATGGCTATGGCCAAATGATATCGCA
ATCGCTAATTGATTTCTGTCGCCAGTACATTCAGAGCCTTAACAATGTGC
AATCCTCTTCCTGGTTTTCGTCGCTGTCGAATATTGTGGGCAACATGTTT
GTGTCGGATGAAGGATGCGAACGGGTGCAGCAGATCAAGGCGAATAATGG
CCTTCTACTTGCCCTCTACGAGGCAGTGCACCTGAATCGGAACTTCATCA
CAACTCTGGCTCACACGCAGGCAGAGTCCAGTGCCCCGCCCTCGCCCAGT
AACACATTGAGTCTGGCCCAACCTGTGCCGGATCTATCTAATGCACCCAT
CATTGACATTACGCAGTATCCCACCAATCTGCTGGTGGCCGTATTTCAGT
ACTGTTCCATCGTGATGCAGGACAATAAGAACGAATCGAGCATTGCTAAT
CTGAAGCTGTGTTTCCTCATCCTCACCTGCATTTCCGAGGACCAGTACGC
CAACTCCATGATGCACGACAGCAATCTTACCTTCAAAGTCATGCTGCATC
GGGCGCAGATGCGTCATCGCAAGCTGAATGTGGATCGGGTGGGCAAGTCC
CAGCCTTTGGCTGCCACTCTACTGGACCTCCTGGTGGAGTTCATTGTATC
GCATTTGATGAAAAAGTTCCCGATGGAGCTGTATCTGCTCTGCATTGGAG
TTATCCATCGAATCTTGTGCTATCAAAAGAGATGTAGAGTGCGGCTCAAT
TATCCGTGGAAGGAACTTTGGTCGGCTCTCATTGGTCTTCTGCGGTTCTT
GGTCAACCAAGAACAGACGCTGGTTAAAAAGTGCAACATTTTTCATCTGT
CGCTACAGGTGGTGAATATATTTAATCTGTTTATTACGTACGGTGATACT
TTCCTGGCCACAACAAATAGCTATGATGAGCTCTACTACGAACTGAACCG
CGAGGAGAAGGTATTTACGGAAATACATGCCATGGTTCTTCGCTATACAA
CGATGCCGGACTGCGAATACAAAGACGATGTAATCAAGCTCTTAAACGCT
TTGGTAAATATCCTGGCCATTGTTAAGCACTTTCAGAACAAGATCAAGGA
ATGGCTGGCCGAACAAGGCCTCTCTACGCCCACGGAGGAGCAGATACTCG
ACGTGGTGCGCAAGAACTACGACCTAACGCTCAAACTGCAGGACTCCCTG
GACCAATACGAACGTTACACAGAAACGCCGCTGCACACCAACTTCTTTAA
GTTGATGGTTCGCGATGTTGTCAACGATACGCGCAAGCACATCTACGGCT
ATGTGAAGGAGGCAGTATCTGTTATTCCGGACCAGGAAATTCTCCTCAGT
TCCTCTATGACATCCGTTTCGGCCGGTACAGCCACTCCGGCTTCAGCAAC
AGCAGTGCCAGAAGCAAAAGCGTTGCCTTCTTTTGCTTAGAAGCTTTCTA
GACCAT
BS28795.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-RB | 2124 | CG8379-PB | 1..2124 | 17..2140 | 10620 | 100 | Plus |
| CG8379-RA | 2121 | CG8379-PA | 1..2121 | 17..2140 | 10540 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-RB | 2450 | CG8379-RB | 144..2268 | 16..2140 | 10625 | 100 | Plus |
| CG8379-RA | 2447 | CG8379-RA | 144..2265 | 16..2140 | 10545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8825632..8826588 | 729..1685 | 4785 | 100 | Plus |
| 3R | 32079331 | 3R | 8824951..8825408 | 272..729 | 2290 | 100 | Plus |
| 3R | 32079331 | 3R | 8826642..8827097 | 1685..2140 | 2280 | 100 | Plus |
| 3R | 32079331 | 3R | 8824686..8824889 | 69..272 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 8824554..8824610 | 16..72 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:28:46 has no hits.
BS28795.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:47:06 Download gff for
BS28795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RB | 146..2269 | 17..2140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:24 Download gff for
BS28795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RB | 145..2268 | 17..2140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:49 Download gff for
BS28795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RB | 145..2268 | 17..2140 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:49 Download gff for
BS28795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8825633..8826588 | 730..1685 | 100 | -> | Plus |
| 3R | 8824555..8824608 | 17..70 | 100 | -> | Plus |
| 3R | 8824688..8824889 | 71..272 | 100 | -> | Plus |
| 3R | 8824952..8825408 | 273..729 | 100 | -> | Plus |
| 3R | 8826643..8827097 | 1686..2140 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:24 Download gff for
BS28795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4650277..4650330 | 17..70 | 100 | -> | Plus |
| arm_3R | 4650410..4650611 | 71..272 | 100 | -> | Plus |
| arm_3R | 4650674..4651130 | 273..729 | 100 | -> | Plus |
| arm_3R | 4651355..4652310 | 730..1685 | 100 | -> | Plus |
| arm_3R | 4652365..4652819 | 1686..2140 | 100 | | Plus |
BS28795.pep Sequence
Translation from 16 to 2139
> BS28795.pep
MTSRKRSGSGSTKRPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNF
EALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTEDHPKRLCNSLHTLC
SLFYGIFKKSNAEPTLNILNEIFGHEKMDEWLKLLMQYCNRILLGDVPEN
ARFMCLKLLQVLVTGTDNVNQNALFEHLMMHSMFDAFVRLLSDPTFRSQH
GHDIVILLTILVNYRKHEATNPYVVQLSILADELALNGYGQMISQSLIDF
CRQYIQSLNNVQSSSWFSSLSNIVGNMFVSDEGCERVQQIKANNGLLLAL
YEAVHLNRNFITTLAHTQAESSAPPSPSNTLSLAQPVPDLSNAPIIDITQ
YPTNLLVAVFQYCSIVMQDNKNESSIANLKLCFLILTCISEDQYANSMMH
DSNLTFKVMLHRAQMRHRKLNVDRVGKSQPLAATLLDLLVEFIVSHLMKK
FPMELYLLCIGVIHRILCYQKRCRVRLNYPWKELWSALIGLLRFLVNQEQ
TLVKKCNIFHLSLQVVNIFNLFITYGDTFLATTNSYDELYYELNREEKVF
TEIHAMVLRYTTMPDCEYKDDVIKLLNALVNILAIVKHFQNKIKEWLAEQ
GLSTPTEEQILDVVRKNYDLTLKLQDSLDQYERYTETPLHTNFFKLMVRD
VVNDTRKHIYGYVKEAVSVIPDQEILLSSSMTSVSAGTATPASATAVPEA
KALPSFA*
BS28795.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-PB | 707 | CG8379-PB | 1..707 | 1..707 | 3660 | 100 | Plus |
| CG8379-PA | 706 | CG8379-PA | 1..706 | 1..707 | 3643 | 99.9 | Plus |
