Clone BS28796 Report

Search the DGRC for BS28796

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG13058-RA
Protein status:BS28796.pep: gold
Sequenced Size:479

Clone Sequence Records

BS28796.complete Sequence

479 bp assembled on 2012-03-26

GenBank Submission: KX805682

> BS28796.complete
GAAGTTATCAGTCGACATGCACATCACGGTTGTTTGCCTCGTATTCACCT
GGGGCCTGAGCCACAGTCACGCAGCCACGACAATCCTGCATGGCAACGGA
CAGGTGGCCAGTGCCATTTCCCACCAGAGCTTCAGCAGATTATCCTCAGC
AGAGCCACTAACCCTGCAGTCCCGAAAGCAAACACATCAGCTGCTCGTTC
CCTCTGCCAGGATTGTTAATCATCACCAGGCGGCAGTGGAACGACAGCAG
GTGGAGAGGTTCTTTCAGGCGGCAACGGCGGAGGCGGAGGAGGTGCCTGT
CATCTCTGGACAGACACCCGCCCATCTCACCTACGCTGCCCATCCAGTGG
TGCACCAGATGCTGCCAAGGATTAAGCCAGTGCGAAACATTAGCTACGCC
TCCCTGATCCCAGGACCTCGCAGCCTGAACACTCATACGAATCGGAATTT
GTCACCCGTTTGAAAGCTTTCTAGACCAT

BS28796.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13058-RA 447 CG13058-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13058-RA 606 CG13058-RA 27..474 16..463 2240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16328967..16329402 28..463 2180 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:19:03 has no hits.

BS28796.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:15:01 Download gff for BS28796.complete
Subject Subject Range Query Range Percent Splice Strand
CG13058-RA 30..475 17..462 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:21 Download gff for BS28796.complete
Subject Subject Range Query Range Percent Splice Strand
CG13058-RA 28..473 17..462 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:25 Download gff for BS28796.complete
Subject Subject Range Query Range Percent Splice Strand
CG13058-RA 28..473 17..462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:25 Download gff for BS28796.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16328960..16329401 17..462 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:21 Download gff for BS28796.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16322060..16322501 17..462 98   Plus

BS28796.pep Sequence

Translation from 16 to 462

> BS28796.pep
MHITVVCLVFTWGLSHSHAATTILHGNGQVASAISHQSFSRLSSAEPLTL
QSRKQTHQLLVPSARIVNHHQAAVERQQVERFFQAATAEAEEVPVISGQT
PAHLTYAAHPVVHQMLPRIKPVRNISYASLIPGPRSLNTHTNRNLSPV*

BS28796.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13058-PA 148 CG13058-PA 1..148 1..148 759 100 Plus