BS28804.complete Sequence
2093 bp assembled on 2012-04-06
GenBank Submission: KX806102
> BS28804.complete
GAAGTTATCAGTCGACATGTGCACAATGCCAGCAACAAGAGATGCATCCG
GCTCCGGCGATGCATCAACTGACCTCATCGCAGCAAGGAGCCTCTCCAGC
CACCAAGGACAGCGCTCCAACTTGCGCATATTTAAACTTTTGATTAGCTG
CTGCCTCTTAATGTTGTGCATTTACCCAAATGCCTGGCCCTGGTCCATCG
GCCCCGGATCGGGACCCTTCTCTGTCTCGGCCGACAGCATCAAGGGCCGC
GGCGATACTCACCGCCTGGGTGAGATGGGCACCTCCTTATCGTCATCCCT
GCCGTCCTCGTGGCTCACCCAGAGCAATAACCATGCAAATATATCCGAGT
TACTGGACAATCTGCTGCGCGGCTATGACAATAGCATACGTCCGGATTTC
GGTGGACCTCCAGCCACTATTGAAGTGGATATAATGGTTCGCAGCATGGG
CCCAATATCAGAGGTCGATATGACCTACTCGATGGACTGTTATTTCCGCC
AATCCTGGGTGGATAAACGTCTCGCATTCGAGGGCGCCCAGGACACGCTG
GCACTGAGCGTCTCGATGTTGGCACGGATTTGGAAGCCGGATACGTACTT
TTACAACGGCAAGCAGAGCTATTTGCACACGATTACCACGCCAAATAAGT
TTGTGAGGATCTATCAGAACGGACGCGTGCTGTACTCCAGCCGGCTGACA
ATTAAAGCCGGCTGCCCCATGAATCTGGCCGATTTTCCAATGGATATACA
AAAGTGTCCTCTGAAATTCGGTTCATTTGGCTACACAACGTCGGATGTCA
TCTACCGTTGGAACAAAGAAAGACCACCCGTCGCCATTGCCGAGGACATG
AAGCTGTCCCAATTCGATTTGGTCGACTGTCCGGCTGGAAATTTAACGGA
CATTGTTTACAAGGCGGCTGCTCCAAGACCACAACGTCGCCCATTCAACA
ACAAGGATCCACCACGACCCACCAGCAAGGTAATGACCACTTTCGCCGGT
CCCGCGGCAAAGAATCAGCATGTCCGCGGCACGGGACTCAAGCTGGACAA
AGGAGCCTTCGGTACCGGACGGGATGCAACTGGTGGCTCGGGGTCGACCA
CCGGTCTAAGTGGCACTATTACGCTGGAAACAAATCATCCGTCGGAGTAC
TCCATGTTGATGGTAAACTTCCACCTGCAGCGTCACATGGGCAACTTTCT
GATTCAGGTGTACGGTCCCTGCTGCCTGCTGGTGGTCCTCAGTTGGGTGT
CCTTCTGGCTGAACCGCGAGGCCACTGCTGATCGGGTTTCCCTCGGGATC
ACTACCGTGCTGACGATGACCTTTCTCGGACTGGAGGCTCGCACGGATCT
GCCCAAGGTGTCCTATCCCACGGCCCTGGACTTCTTCGTGTTCCTCTCGT
TCGGCTTTATCTTTGCCACAATCCTGCAGTTTGCCGTGGTGCACTACTAC
ACCAAGTACGGATCGGGGGAGTGCTATTTCATAATCGAGGAGCTGGACTC
GGAATCGGGGGAATCGGAGACGGAGCCACTGACCTCGGACTTTCGGGGCA
GCACAGAGTCCAAGATCTACGAAGTCATTCCGCTGTCCATGTGCGCTATT
AGCATGCCGCCGCCTCCCACTCGGCTGGGCATGCTAACCTCCAGGAATCG
GAGGCCCCGGAACAGGCGTCATGGTCTGTGGAGTATGAAGCTTCTGGGTC
TCTTCGACTGGCGGCGAAGAAGAAAGCCGCCACGTGCCGACTCCGACGAG
GATGAGGATGACGAGCAGACGCAGCTAAGGGCCAACGAAGCACCGACCAC
GTCTGCGGCAGCTGCGGCGGCACAAGCTGCTGCACAGGCTGCTCGGATTA
GTCCTCCAACTGGAGGTCGCCGCAGGATGTCCTACTATCGACGCGAGGAG
ATGGAGGCCCGAAGGAAGGGCAAACGAACGCCACAGTACAATTCCGTGTC
GAAGATCGATCGCGCCTCGAGGATCGTCTTCCCACTGCTATTCATCCTTA
TCAACGTGTTCTACTGGTACGGCTACTTGTCGAGGAGCTCAAGGATTTTG
GCCAACACGCCGGATGCGAGCACCTGAAAGCTTTCTAGACCAT
BS28804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grd-RA | 2061 | CG7446-PA | 1..2061 | 17..2077 | 10305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grd-RA | 4071 | CG7446-RA | 921..2981 | 17..2077 | 10305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17837743..17838677 | 1143..2077 | 4675 | 100 | Plus |
| 3L | 28110227 | 3L | 17829314..17829702 | 17..405 | 1945 | 100 | Plus |
| 3L | 28110227 | 3L | 17837278..17837643 | 777..1142 | 1830 | 100 | Plus |
| 3L | 28110227 | 3L | 17831558..17831862 | 472..776 | 1525 | 100 | Plus |
| 3L | 28110227 | 3L | 17831121..17831189 | 404..472 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:28:50 has no hits.
BS28804.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:47:07 Download gff for
BS28804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grd-RA | 357..2416 | 17..2076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:26 Download gff for
BS28804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grd-RA | 921..2980 | 17..2076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:51 Download gff for
BS28804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grd-RA | 921..2980 | 17..2076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:51 Download gff for
BS28804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17829314..17829701 | 17..404 | 100 | -> | Plus |
| 3L | 17831122..17831189 | 405..472 | 100 | -> | Plus |
| 3L | 17831559..17831862 | 473..776 | 100 | -> | Plus |
| 3L | 17837278..17837643 | 777..1142 | 100 | -> | Plus |
| 3L | 17837743..17838676 | 1143..2076 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:26 Download gff for
BS28804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17822414..17822801 | 17..404 | 100 | -> | Plus |
| arm_3L | 17824222..17824289 | 405..472 | 100 | -> | Plus |
| arm_3L | 17824659..17824962 | 473..776 | 100 | -> | Plus |
| arm_3L | 17830378..17830743 | 777..1142 | 100 | -> | Plus |
| arm_3L | 17830843..17831776 | 1143..2076 | 100 | | Plus |
BS28804.pep Sequence
Translation from 16 to 2076
> BS28804.pep
MCTMPATRDASGSGDASTDLIAARSLSSHQGQRSNLRIFKLLISCCLLML
CIYPNAWPWSIGPGSGPFSVSADSIKGRGDTHRLGEMGTSLSSSLPSSWL
TQSNNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEV
DMTYSMDCYFRQSWVDKRLAFEGAQDTLALSVSMLARIWKPDTYFYNGKQ
SYLHTITTPNKFVRIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLK
FGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAGNLTDIVYKA
AAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGT
GRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYG
PCCLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSY
PTALDFFVFLSFGFIFATILQFAVVHYYTKYGSGECYFIIEELDSESGES
ETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRPRNR
RHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAA
AAQAAAQAARISPPTGGRRRMSYYRREEMEARRKGKRTPQYNSVSKIDRA
SRIVFPLLFILINVFYWYGYLSRSSRILANTPDAST*
BS28804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grd-PA | 686 | CG7446-PA | 1..686 | 1..686 | 3612 | 100 | Plus |
| CG8916-PC | 510 | CG8916-PC | 5..194 | 108..296 | 562 | 54.2 | Plus |
| CG8916-PB | 612 | CG8916-PB | 107..296 | 108..296 | 562 | 54.2 | Plus |
| Rdl-PF | 606 | CG10537-PF | 58..238 | 108..286 | 434 | 44.2 | Plus |
| Rdl-PA | 606 | CG10537-PA | 58..238 | 108..286 | 434 | 44.2 | Plus |
| CG8916-PC | 510 | CG8916-PC | 199..307 | 377..485 | 372 | 63.3 | Plus |
| CG8916-PB | 612 | CG8916-PB | 301..409 | 377..485 | 372 | 63.3 | Plus |
| Rdl-PF | 606 | CG10537-PF | 254..356 | 378..480 | 254 | 48.5 | Plus |
