BS28805.complete Sequence
1376 bp assembled on 2012-03-26
GenBank Submission: KX803297
> BS28805.complete
GAAGTTATCAGTCGACATGGGGAATGGCATGAACAAGGTCTTGCCGGGAC
TTTATGTGGGCAACTATCGCGACTCCAAGGATCACGCTCAGCTGGAAAGA
TTCAAGATCTCGCACATCATCGCCATACATGACAGTCCGCGGCGTTTGCT
GCCGGACAAGCACTACCTGTGCGTGATGGCCTCGGATACGCCAGACCAGA
ATCTCTCCCAATACTTTTCCGTCTGCAACGACTTCATACACGCCGCCCGG
CTTCGCGAAGGCAACGTACTCATCCACTGCCTGGCGGGGATGTCGCGCTC
GGTGACCGTGGCCGTGGCCTATATCATGACGGCCACACACCTGAACTGGA
AGGAGGCACTTAAGGTGGTTCGAGCTGGTCGCGCTGTAGCCAATCCAAAT
GCTGGATTCCAGAGCCAACTGCAGGAGTTTGAGCAGTTTAAGCTGTCCGA
GGAACGCCGCCGCTTGAGGGAACGCTTCCCATCCTCGGCTCTGGAGCAAC
TGGATCGCACTAAGGTGGCCACCGCGCTGGACAACTACCAGGAGTTGCTG
CAGAACCGCGACATCTGCGAGGGTAACTGCTCCCGCGGCGAAAAATGTCC
TACAGGCGTCTGCAACATGGACCCCACAAAGGGCTTGTTCCGACGTCGTC
CCTCCAACGCCTCCACTCACTCGCGTCTGCGTGCCCAGTCCTCCAACGCC
AACGCCTCGTCCAGTTCACTTAGCGTAAGCAGTGCCGCCGCCCAATCCTG
CCCCACATCGCCCAAGAACTCACCGCTGCCCATAGTCCGTCGTTCGGTGG
GCAATGAGCGCATACCCGAGGACGAGATCGTCCTGGAACAGCCGCCCACC
ACATCCCGTGAGGCTGCCGAGTATGCCGCCGCCTTCGAGGATGCTCGCCG
TGAGCAGGAGCAGCGCCAACTGCAGCAGCAGCAGCAGCTGTCCAGGAGTC
AGCGCTCTCCCCGGCCGGTCAACTCCTCAAGGGAAGCGCCTCGGGTGAGT
AGCGCCGGCAGTCGAAGGGAGTCGGCGGCCAGGGAGGGAAATGGCTCCGC
ACAGCTGCAACGGAGTGCCAGCACGGTCAGCGGTTTCGGAGTGCGTCCAC
GGAGTAGTCCGGCTGGACTGCACGCTTACACGGGATCGGTTCCTTCCTCC
GTCCACGGTTCCCGAGTGGATTTGCGTGATGCTGACAAGGGATCGGCCAT
ATATCTGGGCTGTTCGGCACCGAGGGCCTCCACGCTATCTATATCCTCGT
CGAGAGGCTCGTCGGGAGGCTCGGCTCCACCCTCACCATGCCACACTCCA
CCCGCCAGTCCACGTCATGGCGTTAAAAGATCCACCAGTCTGGTAAAGAA
GCCGAGATGAAAGCTTTCTAGACCAT
BS28805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10089-RF | 1344 | CG10089-PF | 1..1344 | 17..1360 | 6720 | 100 | Plus |
| CG10089-RD | 1344 | CG10089-PD | 1..1344 | 17..1360 | 6720 | 100 | Plus |
| CG10089-RE | 1344 | CG10089-PE | 19..1344 | 35..1360 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10089-RF | 2289 | CG10089-RF | 555..1901 | 15..1361 | 6735 | 100 | Plus |
| CG10089-RD | 2045 | CG10089-RD | 311..1657 | 15..1361 | 6735 | 100 | Plus |
| CG10089-RE | 3283 | CG10089-RE | 652..1978 | 35..1361 | 6635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:19:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13467343..13467874 | 1134..603 | 2660 | 100 | Minus |
| 3L | 28110227 | 3L | 13468443..13468895 | 606..154 | 2265 | 100 | Minus |
| 3L | 28110227 | 3L | 13466944..13467140 | 1329..1133 | 985 | 100 | Minus |
| 3L | 28110227 | 3L | 13468952..13469072 | 155..35 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:19:21 has no hits.
BS28805.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:15:04 Download gff for
BS28805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10089-RD | 313..1655 | 17..1359 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:32 Download gff for
BS28805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10089-RD | 313..1655 | 17..1359 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:35 Download gff for
BS28805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10089-RD | 313..1655 | 17..1359 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:35 Download gff for
BS28805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13466944..13467139 | 1134..1329 | 100 | <- | Minus |
| 3L | 13466859..13466888 | 1330..1359 | 100 | <- | Minus |
| 3L | 13467344..13467871 | 606..1133 | 100 | <- | Minus |
| 3L | 13468444..13468894 | 155..605 | 100 | <- | Minus |
| 3L | 13468953..13469069 | 38..154 | 100 | <- | Minus |
| 3L | 13469777..13469797 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:32 Download gff for
BS28805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13459959..13459988 | 1330..1359 | 100 | <- | Minus |
| arm_3L | 13460044..13460239 | 1134..1329 | 100 | <- | Minus |
| arm_3L | 13460444..13460971 | 606..1133 | 100 | <- | Minus |
| arm_3L | 13461544..13461994 | 155..605 | 100 | <- | Minus |
| arm_3L | 13462053..13462169 | 38..154 | 100 | <- | Minus |
| arm_3L | 13462877..13462897 | 17..37 | 100 | | Minus |
BS28805.pep Sequence
Translation from 16 to 1359
> BS28805.pep
MGNGMNKVLPGLYVGNYRDSKDHAQLERFKISHIIAIHDSPRRLLPDKHY
LCVMASDTPDQNLSQYFSVCNDFIHAARLREGNVLIHCLAGMSRSVTVAV
AYIMTATHLNWKEALKVVRAGRAVANPNAGFQSQLQEFEQFKLSEERRRL
RERFPSSALEQLDRTKVATALDNYQELLQNRDICEGNCSRGEKCPTGVCN
MDPTKGLFRRRPSNASTHSRLRAQSSNANASSSSLSVSSAAAQSCPTSPK
NSPLPIVRRSVGNERIPEDEIVLEQPPTTSREAAEYAAAFEDARREQEQR
QLQQQQQLSRSQRSPRPVNSSREAPRVSSAGSRRESAAREGNGSAQLQRS
ASTVSGFGVRPRSSPAGLHAYTGSVPSSVHGSRVDLRDADKGSAIYLGCS
APRASTLSISSSRGSSGGSAPPSPCHTPPASPRHGVKRSTSLVKKPR*
BS28805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10089-PF | 447 | CG10089-PF | 1..447 | 1..447 | 2289 | 100 | Plus |
| CG10089-PD | 447 | CG10089-PD | 1..447 | 1..447 | 2289 | 100 | Plus |
| CG10089-PE | 447 | CG10089-PE | 5..447 | 5..447 | 2260 | 99.8 | Plus |
| CG10089-PA | 327 | CG10089-PA | 1..197 | 1..197 | 1032 | 100 | Plus |
| CG10089-PB | 327 | CG10089-PB | 1..197 | 1..197 | 1032 | 100 | Plus |
