BS28859.complete Sequence
1127 bp assembled on 2012-03-26
GenBank Submission: KX802833
> BS28859.complete
GAAGTTATCAGTCGACATGGATTTCCACCTGCTGATGATTGCACTCGTGC
TTGCACCAGTCTTTACACCTGTCCACTGCCAGGTGGCCTGCAATGCGAGG
AGCGGCCCTGTCCGCCAGAAACGCATCGTTCTCAGCAGCCCGGGAACAGG
TGGGCTGGCCGAGTTGGACACTTGCCAGTACCGCGTGGCGCCGTGGAGCG
GCCAGGTGTGTCAGGTGCGCGTTGATTTCGAGCGTTTGGAGCTGCCGCAG
CCGCAGTTGAATGCCAATTCCGGAGTGCTGGAGTGCGTCGATTTTCTGCA
GATACAGCATTTCCGGCTGTGCGGTCGCAACAGTGGTCAGCACTTGTATA
TACCCATTCGCCGGGGTCAGGAGCTGCAGCTTCTGTTTCGACTGGCCACG
TCCCTCGGCAGGCAGTCCACCTGGCAGCTGACTCTCACCCAACTAGAGTG
TCCCAGGGACTCCGCCAGGGGTGTAGGTACAAGGCAACCCGAGGTGCAAA
CACCCACTGTGCGACCGATTTTGCCCTTTTTGGGTAACTTCCTGCCGCGG
ACCATCTTTGGCGGACAATCTGGAATCGGCTCGGGTTCCGGTCCCGCTGC
CCAGCTTATCCAGACTTTCACATCGCCTTCAAGTGCGGATCTGGAGATGT
TGGCACCTCTGGGCTGTGATCAGTACTACAGGACCACCACTGGCGGAATA
GTGAGCTTCAATTTTGCAGGTGGCGTCTATATGCCCAACATGAAGTACTC
GATTTGTGTCAAGGGAGCGGCAGACAACGAGATAAGCTACAAGATCACGC
ACTTTGAGCTCTCGAAGGCGAACTCCGAGCAGCCAGGACCTGCCTATGAC
ACCGATTGCCGCAGTACAGTGCTGACTCCGTTGCGCGTATCTGACTATGT
GAGCATTCCCGATGCATACATGGTCGGCAGGCCAGAGCTGCAGGCCACTC
ACTACTGTGGCAATGGATTGGCTGGCCAGGAGCTAGTGGCCCGGCCGCCT
TTTGTCCTGCGATTCGCCAGTGATTCGCAGTCCAGTGGATCTGAAACGGG
CTTCCAGCTGACCTACACGGTCCGGCGGTCACAGGATTCCCTGGTGTCCA
CAGATCTGTAAAAGCTTTCTAGACCAT
BS28859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15153-RA | 1095 | CG15153-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15153-RA | 1317 | CG15153-RA | 15..1114 | 13..1112 | 5485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18091469..18092242 | 786..13 | 3855 | 99.9 | Minus |
| 2L | 23513712 | 2L | 18090940..18091267 | 1112..785 | 1640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:19:32 has no hits.
BS28859.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:15:06 Download gff for
BS28859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15153-RA | 1..1093 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:38 Download gff for
BS28859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15153-RA | 19..1111 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:40 Download gff for
BS28859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15153-RA | 19..1111 | 17..1109 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:40 Download gff for
BS28859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18090943..18091265 | 787..1109 | 100 | <- | Minus |
| 2L | 18091469..18092238 | 17..786 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:38 Download gff for
BS28859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18090943..18091265 | 787..1109 | 100 | <- | Minus |
| arm_2L | 18091469..18092238 | 17..786 | 100 | | Minus |
BS28859.pep Sequence
Translation from 16 to 1110
> BS28859.pep
MDFHLLMIALVLAPVFTPVHCQVACNARSGPVRQKRIVLSSPGTGGLAEL
DTCQYRVAPWSGQVCQVRVDFERLELPQPQLNANSGVLECVDFLQIQHFR
LCGRNSGQHLYIPIRRGQELQLLFRLATSLGRQSTWQLTLTQLECPRDSA
RGVGTRQPEVQTPTVRPILPFLGNFLPRTIFGGQSGIGSGSGPAAQLIQT
FTSPSSADLEMLAPLGCDQYYRTTTGGIVSFNFAGGVYMPNMKYSICVKG
AADNEISYKITHFELSKANSEQPGPAYDTDCRSTVLTPLRVSDYVSIPDA
YMVGRPELQATHYCGNGLAGQELVARPPFVLRFASDSQSSGSETGFQLTY
TVRRSQDSLVSTDL*
BS28859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15153-PA | 364 | CG15153-PA | 1..364 | 1..364 | 1908 | 100 | Plus |
| CG17047-PB | 392 | CG17047-PB | 96..390 | 33..355 | 424 | 34.4 | Plus |
| CG17047-PA | 392 | CG17047-PA | 96..390 | 33..355 | 424 | 34.4 | Plus |
| CG4734-PA | 325 | CG4734-PA | 10..324 | 10..352 | 230 | 26.5 | Plus |
