BS28863.complete Sequence
1493 bp assembled on 2012-03-26
GenBank Submission: KX805254
> BS28863.complete
GAAGTTATCAGTCGACATGGAAGACGAGGACGATCCCGTCGTGGAGGAGA
TTCCCGTATTCCTGTCGAAGAACCTGAGGGACAGCCTGTATCTCTTTCAA
TACCCCACGAAAACGGAGCTCCCCAACCACGATGACTCCGTGATTGTCAA
TTGTTGTGTAAAACCAATCGCCCAGGAGGTGAAGGTGGACTTCGGCCTGG
ACATTGAGTCGGCCCACTTCGATCGCTTCAAGGGCGAGCAATTTGCGGTG
GCCGCCGACGGAAAGAACACCTATGGAGCAGTTCCACCAAAGGGTCAGGA
GCGACCCACCTACAAACGTGGCATCATGGACAAACAGGCCTTCACAAGCT
CGCGTTCCATAACCGATGTGGCCAAGTACATAGTGGGCATCTTTACGGAT
CGGGAGGTGCATCTGTCGCCACTTACATCCATAGTCCAAATGCGACCCGT
TCTCAGTCACTTCGATAAGGACGACAAGCGCAAGAAGGCGGAACTGAAGG
CTCAAACGGAGGACACGGACGATGACGAGGTGCTGCAGCAGGTCACGGTT
AAATTTGCACGAGGAAATGCCAAAAACAGCGGAAAGGAGCAACGTGTCGG
CACCTACGACAGTTTCGTCCAGCGAATTGCGGATGAGCCGTGGTGCGAGG
CCTACTGGCACTCGAGGGGCACGCCCACCGCCGAACTGGAGCGCCAGAAG
CTCTTTGCCACCAGTCATCACGGCAGTTCCTCTTTGGCTCTCGCTCCTGA
CGAATATCTTCGAAAGCTTCTGCCCTACGACGAGCATGTGCAGACGGTAG
CCCCAGCAGCTGCTTCTGCTGCCGCCCAAGTACTTCCCGTCTACAACAAG
GCCATGCTTAAGTCTATGCCGCTGCTGGAACAGCTTACAGTGCTACTGAG
AGATGCGCGGATGCTCTCGTTCAGCGACGTCATTAGTATTCTCGCGGAGC
ACGTGGATCCGCATGTGGCTGCCGACAAGGTGCTGGCTTTGCTGCCCCAG
GTGGGCATCCTACTGCACGGCAACTGGGTGCCGAAATCCGAGGTGGTCTT
TCCCGAGAAGGTGCTTTCCCATGCGAACGGTGTGTCCGCAGAGCAGATGA
TTCGCGCCAGAGATTATATACTCTTTCGTTTCTCCCGCACGCCCTACCTG
TTCCGAGCTCAGGTAATGGCCGCCACCCAGTTACCTCCTGCGGAAACACT
TGACGTTTTGAAGACTGTGGCCCGGGTGAATAACACAAAACGGTGGGAGC
TGCTACTGCCACCCGACAAGGAGTTCGAGCAAAAGTACCCGGAACTGGTC
AGCCGACAGGAGTACCACTGGACCGCTTCCGAGCAGCACTACAATGAAAT
GGACTGGGCTAGGGAAACCAAACGTGTTCGGAAACGTTCGACGAGGAAGA
GCGAATCCCAGTCACTGACTTCAGCCATGCCGCCGCCCGCAATGAATCAC
TCAACAACTGGCTCCGTCGATGCGTAGAAGCTTTCTAGACCAT
BS28863.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sin-RA | 1461 | CG10582-PA | 1..1461 | 17..1477 | 7290 | 99.9 | Plus |
| Sin-RC | 1458 | CG10582-PC | 29..1458 | 48..1477 | 7135 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sin-RA | 1614 | CG10582-RA | 65..1525 | 17..1477 | 7290 | 99.9 | Plus |
| Sin-RC | 1673 | CG10582-RC | 155..1584 | 48..1477 | 7135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21031979..21033051 | 48..1120 | 5365 | 100 | Plus |
| 3L | 28110227 | 3L | 21033116..21033472 | 1121..1477 | 1770 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:20:16 has no hits.
BS28863.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 14:32:04 Download gff for
BS28863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin-RA | 93..1553 | 17..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:07 Download gff for
BS28863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin-RA | 65..1525 | 17..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:59 Download gff for
BS28863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin-RA | 65..1525 | 17..1477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:59 Download gff for
BS28863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21033116..21033472 | 1121..1477 | 99 | | Plus |
| 3L | 21031889..21031921 | 17..49 | 100 | -> | Plus |
| 3L | 21031981..21033051 | 50..1120 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:07 Download gff for
BS28863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21024989..21025021 | 17..49 | 100 | -> | Plus |
| arm_3L | 21025081..21026151 | 50..1120 | 100 | -> | Plus |
| arm_3L | 21026216..21026572 | 1121..1477 | 99 | | Plus |
BS28863.pep Sequence
Translation from 16 to 1476
> BS28863.pep
MEDEDDPVVEEIPVFLSKNLRDSLYLFQYPTKTELPNHDDSVIVNCCVKP
IAQEVKVDFGLDIESAHFDRFKGEQFAVAADGKNTYGAVPPKGQERPTYK
RGIMDKQAFTSSRSITDVAKYIVGIFTDREVHLSPLTSIVQMRPVLSHFD
KDDKRKKAELKAQTEDTDDDEVLQQVTVKFARGNAKNSGKEQRVGTYDSF
VQRIADEPWCEAYWHSRGTPTAELERQKLFATSHHGSSSLALAPDEYLRK
LLPYDEHVQTVAPAAASAAAQVLPVYNKAMLKSMPLLEQLTVLLRDARML
SFSDVISILAEHVDPHVAADKVLALLPQVGILLHGNWVPKSEVVFPEKVL
SHANGVSAEQMIRARDYILFRFSRTPYLFRAQVMAATQLPPAETLDVLKT
VARVNNTKRWELLLPPDKEFEQKYPELVSRQEYHWTASEQHYNEMDWARE
TKRVRKRSTRKSESQSLTSAMPPPAMNHSTTGSVDA*
BS28863.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sin-PA | 486 | CG10582-PA | 1..486 | 1..486 | 2514 | 100 | Plus |
| Sin-PC | 485 | CG10582-PC | 10..485 | 11..486 | 2458 | 99.8 | Plus |
