BS28866.complete Sequence
557 bp assembled on 2012-03-26
GenBank Submission: KX806057
> BS28866.complete
GAAGTTATCAGTCGACATGTTTAAGAATTCCGTTGCCTTGACGTGCGAAT
ACTCAACCATGTATTATAACTCAATTTATAATACTTCCAACATGTTCGAC
ATGAAACACTCCGAAAGTCAAGTTCAGCAACAAATATATAACACAAGTCA
CCTAGGTTATGTGCCAACTTCGAATACTCGGATTGTTAAGAAACGTAATA
CAGCTAACAAAAAGGAGAGAAGGCGAACCCAAAGTATAAACAATGCGTTT
TCCTATCTGCGAGAAAAGATTCCCAACGTTCCTACAGATACTAAATTATC
AAAGATTAAAACATTGAAGTTGGCCATATTGTACATAAACTATTTAGTTA
ATGTTCTTGATGGAGATCTGGATCCAAAAGGCGGATTTCGAGCCGAACTT
AAGCCGGTCAGTCGAAAGATCTGTAGCGAAAAGAAGCACTGTTTGAAATC
AGAGATTCAAAATGTTCCATTGTCGACCAAGGGCCGCACGGGTTGGCCAC
AAGATGTTTGGGCATCGGAACTTATTCCAGAACATAATTAAAAGCTTTCT
AGACCAT
BS28866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hand-RA | 525 | CG18144-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hand-RA | 713 | CG18144-RA | 87..612 | 17..542 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10294863..10295059 | 304..108 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 10294474..10294631 | 460..303 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 10295209..10295299 | 107..17 | 455 | 100 | Minus |
| 2L | 23513712 | 2L | 10292780..10292866 | 542..456 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:19:38 has no hits.
BS28866.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:15:07 Download gff for
BS28866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hand-RA | 7..523 | 23..539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:42 Download gff for
BS28866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hand-RA | 93..609 | 23..539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:42 Download gff for
BS28866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hand-RA | 93..609 | 23..539 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:42 Download gff for
BS28866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10292783..10292861 | 461..539 | 100 | <- | Minus |
| 2L | 10294474..10294629 | 305..460 | 100 | <- | Minus |
| 2L | 10294863..10295059 | 108..304 | 100 | <- | Minus |
| 2L | 10295209..10295293 | 23..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:42 Download gff for
BS28866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10292783..10292861 | 461..539 | 100 | <- | Minus |
| arm_2L | 10294474..10294629 | 305..460 | 100 | <- | Minus |
| arm_2L | 10294863..10295059 | 108..304 | 100 | <- | Minus |
| arm_2L | 10295209..10295293 | 23..107 | 100 | | Minus |
BS28866.pep Sequence
Translation from 16 to 540
> BS28866.pep
MFKNSVALTCEYSTMYYNSIYNTSNMFDMKHSESQVQQQIYNTSHLGYVP
TSNTRIVKKRNTANKKERRRTQSINNAFSYLREKIPNVPTDTKLSKIKTL
KLAILYINYLVNVLDGDLDPKGGFRAELKPVSRKICSEKKHCLKSEIQNV
PLSTKGRTGWPQDVWASELIPEHN*
BS28866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hand-PA | 174 | CG18144-PA | 1..174 | 1..174 | 914 | 100 | Plus |
| Fer1-PA | 251 | CG33323-PA | 77..140 | 54..117 | 152 | 48.4 | Plus |
| Fer1-PB | 256 | CG33323-PB | 82..145 | 54..117 | 152 | 48.4 | Plus |
| HLH54F-PA | 242 | CG5005-PA | 32..88 | 59..115 | 150 | 47.4 | Plus |
| Fer2-PE | 273 | CG5952-PE | 148..210 | 59..120 | 145 | 52.4 | Plus |
