BS28874.complete Sequence
1589 bp assembled on 2012-03-26
GenBank Submission: KX805687
> BS28874.complete
GAAGTTATCAAGCGACATGGATCAGTCGATGATAGCACTCGCTTTGTTTA
TAATACTGCTCGTTTTGCTCTACAAGTGGTCGGTGGCCAAATATGATGTG
TTCAGTGAAAGGGGTGTGTCACATGAGAAGCCATGGCCTCTAATTGGCAA
TATTCCGCTGAAAGCCATGATCGGTGGAATGCCAGTACTAAAGAAAATGA
TCGAATTGCATACGAAACACACGGGATCCCCGGTATATGGTATCTACGCC
CTTCGAGATGCCGTCTTCTTTGTCCGAGACCCTGAGCTCATCAAGCTCAT
CGGCATCAAGGAATTCGACCACTTCGTTAACCACAATAGCATGCACAACA
ATATACAGGAGTCGATACTCTCGAAAAGTCTCATTTCGCTGCGCGATGGT
CGATGGAAGGAGATGCGCAATATCCTGACACCCGCATTTACGGGGAGCAA
AATGCGGATAATGTACGACCTGATCCAATCGTGCAGCGAGGAGGGCGTTA
TCCACATACAGGAGCAGTTGGAGCTGTCGCAGGACGCGAGCATCGAACTG
GAAATGAAGGATTACTTCACGCGATTCGCCAACGATGTGATTGCTACGGT
GGCCTTCGGCATCAGCATCAACTCGTTCAGGCGCAAAGATAACGAGTTCT
TCCGCATCGGACAAGCCATGTCCAGGATTAGCGCCTGGTCGGTGGTCAAG
GCCATGCTATATGCCCTCTTTCCACGACTGATGAAGGTTCTCCGCATCCA
GGTGCTGGACACCAAGAACATTGATTACTTCAGCAGCCTGGTCACCGCGG
CGATGAGGTACCGCCAGGAGCACAAAGTGGTTAGGCCGGATATGATCCAC
CTGCTGATGGAGGCAAAGCAGCAGAGGCTTGCCGATCTGAGTGATAAGTC
GAAGGATGAGCTATACTATTCCGAGTTCACCGCCGATGACTTGCTGGCCC
AGTGTCTGCTATTCTTCTTTGCCGGCTTTGAGATTATCTCGTCGTCCTTG
TGCTTCCTCACCCATGAACTCTGCTTGAATCCCACGGTGCAGGACAGGTT
GTATGAGGAGATCATTTCCGTGCACGAAGAGCTGAAAGGTCAACCCCTGA
CCTATGACAAGCTGACCAAGATGAAGTATCTGGACATGGTGGTACTCGAA
GCACTGCGTAAATGGCCACCATCGATTTCCACCGATCGTGAGTGCCGTCA
GGATATTGATTTGTTCGATGAAAATGGTCAGAAGTTGTTCTCCGCCCGAA
AGGGTGATGTCTTGCAAATACCTATCTTCTCGCTCCATCACGATCCCGAG
AACTTCGAGGATCCGGAGTTCTTCAATCCGGAGCGCTTCGCAGATGGTCA
TGCTCTAGAGTCCCGTGTTTACATGCCCTTCGGAGTGGGTCCTCGCAACT
GCATTGGCAATCGAATGGCACTGATGGAGCTCAAATCAATAGTATACCAG
TTGCTTTTAAATTTCAAACTATTGCCAGCTAAAAGGACTTCTCGCGATTT
GCTGAACGACATAAGGGGTCATGGTTTGAAGCCGAAGAATGGCTTCTGGC
TGAAGTTCGAGGCGCGTCAATAAAAGCTTTCTAGACCAT
BS28874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9h1-RA | 1557 | CG17577-PA | 1..1557 | 17..1573 | 7770 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9h1-RA | 1617 | CG17577-RA | 37..1595 | 16..1574 | 7780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12840835..12841674 | 1574..735 | 4185 | 99.9 | Minus |
| 2R | 25286936 | 2R | 12841800..12842522 | 738..16 | 3615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:19:44 has no hits.
BS28874.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:15:09 Download gff for
BS28874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9h1-RA | 38..1592 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:47 Download gff for
BS28874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9h1-RA | 38..1592 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:45 Download gff for
BS28874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9h1-RA | 38..1592 | 17..1571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:45 Download gff for
BS28874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12840838..12841672 | 737..1571 | 99 | <- | Minus |
| 2R | 12841802..12842521 | 17..736 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:47 Download gff for
BS28874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8728343..8729177 | 737..1571 | 99 | <- | Minus |
| arm_2R | 8729307..8730026 | 17..736 | 100 | | Minus |
BS28874.pep Sequence
Translation from 16 to 1572
> BS28874.pep
MDQSMIALALFIILLVLLYKWSVAKYDVFSERGVSHEKPWPLIGNIPLKA
MIGGMPVLKKMIELHTKHTGSPVYGIYALRDAVFFVRDPELIKLIGIKEF
DHFVNHNSMHNNIQESILSKSLISLRDGRWKEMRNILTPAFTGSKMRIMY
DLIQSCSEEGVIHIQEQLELSQDASIELEMKDYFTRFANDVIATVAFGIS
INSFRRKDNEFFRIGQAMSRISAWSVVKAMLYALFPRLMKVLRIQVLDTK
NIDYFSSLVTAAMRYRQEHKVVRPDMIHLLMEAKQQRLADLSDKSKDELY
YSEFTADDLLAQCLLFFFAGFEIISSSLCFLTHELCLNPTVQDRLYEEII
SVHEELKGQPLTYDKLTKMKYLDMVVLEALRKWPPSISTDRECRQDIDLF
DENGQKLFSARKGDVLQIPIFSLHHDPENFEDPEFFNPERFADGHALESR
VYMPFGVGPRNCIGNRMALMELKSIVYQLLLNFKLLPAKRTSRDLLNDIR
GHGLKPKNGFWLKFEARQ*
BS28874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9h1-PA | 518 | CG17577-PA | 1..518 | 1..518 | 2681 | 100 | Plus |
| Cyp9c1-PA | 522 | CG3616-PA | 4..519 | 6..517 | 1332 | 50.1 | Plus |
| Cyp9f2-PA | 516 | CG11466-PA | 7..515 | 9..517 | 1090 | 43.2 | Plus |
| Cyp9b2-PA | 505 | CG4486-PA | 6..505 | 6..518 | 1033 | 40.5 | Plus |
| Cyp9b1-PA | 505 | CG4485-PA | 2..505 | 4..518 | 1003 | 39.1 | Plus |
