BS28881.complete Sequence
1094 bp assembled on 2012-04-18
GenBank Submission: KX802189
> BS28881.complete
GAAGTTATCAGTCGACATGAAGTTGGTTGTCTATCTCTATTTCTCCATGA
TTGTGCTGGGCGTCCAGGCCTGGCCCAGTGTAAAGCGGTCCTTTGAGCTT
TTCCCCAACCCTGCGATGCCGCACAATGTGCACACGGTCTCAGATTGCAT
GCATGTGGCCTCCGAGGCAGGTGACTACATCTTCAAGAAGCTCAACCCAC
TCAACTCGGCCCTCAACCGGGAGGCCGCCCTGCTCGAACTGGAGGTGGCA
GGAGCTGCGGCAGTGGGTGTTGTTCCGGGGGAGGGCGCAGCGGCAGGGGC
AGGAGCAGGAGCTGGAACGGCAGCAGATGTCCAGGAACTGCAGCCGGAGG
TATGTGGGCTTTATGTGATTGGGGAGCCAGACACGATTGTGGAGATTACA
ATGAAGCACTACGATGCGAACTGCGAGACAGGAGCCCTAATGGCGTTTGT
CGACGGCTGGGAGCTGAATGGCGAGTACTTTCCGGGCATTAAGGATCACC
ATCGACCGCTGGAGGAGCGCGTTTACGAGTTCTGCAACAACTACAGACAA
TGGCCCCGAGTTAGTAACAAGAAGTTCTTCCGCTCGAGCCAGAATGCCGC
CTTGCTCCAATACCGAATTCCCGTTCGAGGCTCCTTTGTGGCCAATGTGC
GGTTCCACAAGATCACGCAACCCTGTAACGTTTTGGTCCAGGACACGGCC
GCCATGTACAAGATGACCAACTTTGGGCAGGCTCGCAACTGCACCATCTC
GGCGCTCTTTCCGGCTGTGGTCTCGCTGGCCAGTTTGCGGATTGGCGGCA
AGAGTGTGCGGGCCCAGCCGAAAGTCAACTACGATTGTCAATTGCCCAGC
GATCGCTTAGAAATCGGTGGAGCCGCCGGTCTGGATGCCATTGGAATGGA
GCAGGCCAGTGCCGTGTGCGGTGCCTCCAGTGACTTGGGTCCCGAGCAGG
CCATCTTTTGCGGCGTGAGCACCGTGCGGCTGGTGTCCTCCGGTCGCTAT
CAGAACCAGGCGGCCATTGTCCTGCGCAAGGCGGATGTGCCGGACATGGA
GATCGCCACGCTCATCTGTGCGCTCTAAAAGCTTTCTAGACCAT
BS28881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15537-RC | 1062 | CG15537-PC | 1..1062 | 17..1078 | 5310 | 100 | Plus |
| CG15537-RB | 1062 | CG15537-PB | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15537-RC | 1600 | CG15537-RC | 359..1420 | 17..1078 | 5310 | 100 | Plus |
| CG15537-RB | 1466 | CG15537-RB | 359..1420 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30436218..30436524 | 445..139 | 1535 | 100 | Minus |
| 3R | 32079331 | 3R | 30435357..30435599 | 1078..836 | 1215 | 100 | Minus |
| 3R | 32079331 | 3R | 30435657..30435820 | 835..672 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 30435882..30436001 | 671..552 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 30436052..30436160 | 553..445 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 30438301..30438379 | 143..65 | 395 | 100 | Minus |
| 3R | 32079331 | 3R | 30443190..30443241 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:00:15 has no hits.
BS28881.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 21:42:27 Download gff for
BS28881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15537-RB | 1..1060 | 17..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:23 Download gff for
BS28881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15537-RB | 359..1418 | 17..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:42 Download gff for
BS28881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15537-RB | 359..1418 | 17..1076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:42 Download gff for
BS28881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30435359..30435599 | 836..1076 | 100 | <- | Minus |
| 3R | 30435657..30435820 | 672..835 | 100 | <- | Minus |
| 3R | 30435882..30436000 | 553..671 | 100 | <- | Minus |
| 3R | 30436053..30436159 | 446..552 | 100 | <- | Minus |
| 3R | 30436218..30436519 | 144..445 | 100 | <- | Minus |
| 3R | 30438301..30438376 | 68..143 | 100 | <- | Minus |
| 3R | 30443191..30443241 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:23 Download gff for
BS28881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26261775..26261881 | 446..552 | 100 | <- | Minus |
| arm_3R | 26261081..26261321 | 836..1076 | 100 | <- | Minus |
| arm_3R | 26261379..26261542 | 672..835 | 100 | <- | Minus |
| arm_3R | 26261604..26261722 | 553..671 | 100 | <- | Minus |
| arm_3R | 26261940..26262241 | 144..445 | 100 | <- | Minus |
| arm_3R | 26264023..26264098 | 68..143 | 100 | <- | Minus |
| arm_3R | 26268913..26268963 | 17..67 | 100 | | Minus |
BS28881.pep Sequence
Translation from 16 to 1077
> BS28881.pep
MKLVVYLYFSMIVLGVQAWPSVKRSFELFPNPAMPHNVHTVSDCMHVASE
AGDYIFKKLNPLNSALNREAALLELEVAGAAAVGVVPGEGAAAGAGAGAG
TAADVQELQPEVCGLYVIGEPDTIVEITMKHYDANCETGALMAFVDGWEL
NGEYFPGIKDHHRPLEERVYEFCNNYRQWPRVSNKKFFRSSQNAALLQYR
IPVRGSFVANVRFHKITQPCNVLVQDTAAMYKMTNFGQARNCTISALFPA
VVSLASLRIGGKSVRAQPKVNYDCQLPSDRLEIGGAAGLDAIGMEQASAV
CGASSDLGPEQAIFCGVSTVRLVSSGRYQNQAAIVLRKADVPDMEIATLI
CAL*
BS28881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15537-PC | 353 | CG15537-PC | 1..353 | 1..353 | 1833 | 100 | Plus |
| CG15537-PB | 353 | CG15537-PB | 1..353 | 1..353 | 1833 | 100 | Plus |
