BS28901.complete Sequence
626 bp assembled on 2012-04-19
GenBank Submission: KX804882
> BS28901.complete
GAAGTTATCAGTCGACATGAGCCAATACGACAATCCGTTTAAGATTATCC
TCCTGGGTGACAGCGGCGTAGGCAAAACCTGCCTGCTGATGCGTTTCTCG
GATAACCAATTCACCACAAGACACCGGAGCACTGTGGGCTTGGATAGAAG
GGAGTGCAGCGTGGAGTTTGCCGATTGGAGGATGGGGAGGATGCTGCAAG
TCTGGGACACCTCCGACGACGAGCGCTTCAAATTGCTGAAGGCGACCCAA
TGTCGCAGTGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAA
AAGTTTCCAAAACATCGATGGCTGGATGAAGGAGATACGGCGCCTGTGTC
CGGATAAGGTAATTGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAAC
CATCGCCAGGTGAGCATGGCGCAGGGGTTCAACTATGCCCATCGTCAGTC
AATCTGCTTTGAAGAGGTTTCCGCCAAGAGTGGAAGGAATGTATATGACA
TATTTAGCTCGTTGGCAATGGACATATATACATATCGTCGTGTACATTAC
AACCCGTTCAGCTTGACATCTTGGCAGGAAGAGGAGGACGCTGCAGAGTC
ACTGGATTAAAAGCTTTCTAGACCAT
BS28901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9D-RA | 594 | CG32678-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Rab9E-RA | 594 | CG32673-PA | 1..594 | 17..610 | 2895 | 99.2 | Plus |
Rab9Fa-RA | 594 | CG32671-PA | 1..594 | 17..610 | 2895 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9D-RA | 897 | CG32678-RA | 94..687 | 17..610 | 2970 | 100 | Plus |
Rab9E-RA | 889 | CG32673-RA | 86..679 | 17..610 | 2895 | 99.2 | Plus |
Rab9Fa-RA | 871 | CG32671-RA | 68..661 | 17..610 | 2895 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10589182..10589775 | 17..610 | 2970 | 100 | Plus |
X | 23542271 | X | 10661165..10661758 | 610..17 | 2895 | 99.2 | Minus |
X | 23542271 | X | 10950370..10950963 | 610..17 | 2895 | 99.2 | Minus |
X | 23542271 | X | 10622565..10623158 | 610..17 | 2820 | 98.3 | Minus |
X | 23542271 | X | 10417496..10418083 | 17..610 | 1635 | 86.1 | Plus |
X | 23542271 | X | 10951938..10952419 | 504..17 | 1070 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:17:38 has no hits.
BS28901.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:13 Download gff for
BS28901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9D-RA | 94..685 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:03 Download gff for
BS28901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9D-RA | 94..685 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:41 Download gff for
BS28901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9D-RA | 94..685 | 17..608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:41 Download gff for
BS28901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10589182..10589773 | 17..608 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:03 Download gff for
BS28901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10483215..10483806 | 17..608 | 100 | | Plus |
BS28901.pep Sequence
Translation from 16 to 609
> BS28901.pep
MSQYDNPFKIILLGDSGVGKTCLLMRFSDNQFTTRHRSTVGLDRRECSVE
FADWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNI
DGWMKEIRRLCPDKVIVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEE
VSAKSGRNVYDIFSSLAMDIYTYRRVHYNPFSLTSWQEEEDAAESLD*
BS28901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9D-PA | 197 | CG32678-PA | 1..197 | 1..197 | 1044 | 100 | Plus |
Rab9E-PA | 197 | CG32673-PA | 1..197 | 1..197 | 1032 | 98 | Plus |
Rab9Fa-PA | 197 | CG32671-PA | 1..197 | 1..197 | 1028 | 98.5 | Plus |
Rab9Db-PA | 197 | CG9807-PA | 1..197 | 1..197 | 1018 | 97 | Plus |
RabX2-PA | 195 | CG2885-PA | 1..195 | 1..197 | 688 | 71.7 | Plus |