Clone BS28901 Report

Search the DGRC for BS28901

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:289
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptRab9D-RA
Protein status:BS28901.pep: gold
Sequenced Size:626

Clone Sequence Records

BS28901.complete Sequence

626 bp assembled on 2012-04-19

GenBank Submission: KX804882

> BS28901.complete
GAAGTTATCAGTCGACATGAGCCAATACGACAATCCGTTTAAGATTATCC
TCCTGGGTGACAGCGGCGTAGGCAAAACCTGCCTGCTGATGCGTTTCTCG
GATAACCAATTCACCACAAGACACCGGAGCACTGTGGGCTTGGATAGAAG
GGAGTGCAGCGTGGAGTTTGCCGATTGGAGGATGGGGAGGATGCTGCAAG
TCTGGGACACCTCCGACGACGAGCGCTTCAAATTGCTGAAGGCGACCCAA
TGTCGCAGTGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAA
AAGTTTCCAAAACATCGATGGCTGGATGAAGGAGATACGGCGCCTGTGTC
CGGATAAGGTAATTGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAAC
CATCGCCAGGTGAGCATGGCGCAGGGGTTCAACTATGCCCATCGTCAGTC
AATCTGCTTTGAAGAGGTTTCCGCCAAGAGTGGAAGGAATGTATATGACA
TATTTAGCTCGTTGGCAATGGACATATATACATATCGTCGTGTACATTAC
AACCCGTTCAGCTTGACATCTTGGCAGGAAGAGGAGGACGCTGCAGAGTC
ACTGGATTAAAAGCTTTCTAGACCAT

BS28901.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9D-RA 594 CG32678-PA 1..594 17..610 2970 100 Plus
Rab9E-RA 594 CG32673-PA 1..594 17..610 2895 99.2 Plus
Rab9Fa-RA 594 CG32671-PA 1..594 17..610 2895 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9D-RA 897 CG32678-RA 94..687 17..610 2970 100 Plus
Rab9E-RA 889 CG32673-RA 86..679 17..610 2895 99.2 Plus
Rab9Fa-RA 871 CG32671-RA 68..661 17..610 2895 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10589182..10589775 17..610 2970 100 Plus
X 23542271 X 10661165..10661758 610..17 2895 99.2 Minus
X 23542271 X 10950370..10950963 610..17 2895 99.2 Minus
X 23542271 X 10622565..10623158 610..17 2820 98.3 Minus
X 23542271 X 10417496..10418083 17..610 1635 86.1 Plus
X 23542271 X 10951938..10952419 504..17 1070 81.8 Minus
Blast to na_te.dros performed on 2014-11-28 05:17:38 has no hits.

BS28901.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:13 Download gff for BS28901.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 94..685 17..608 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:03 Download gff for BS28901.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 94..685 17..608 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:41 Download gff for BS28901.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9D-RA 94..685 17..608 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:41 Download gff for BS28901.complete
Subject Subject Range Query Range Percent Splice Strand
X 10589182..10589773 17..608 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:03 Download gff for BS28901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10483215..10483806 17..608 100   Plus

BS28901.pep Sequence

Translation from 16 to 609

> BS28901.pep
MSQYDNPFKIILLGDSGVGKTCLLMRFSDNQFTTRHRSTVGLDRRECSVE
FADWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNI
DGWMKEIRRLCPDKVIVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEE
VSAKSGRNVYDIFSSLAMDIYTYRRVHYNPFSLTSWQEEEDAAESLD*

BS28901.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9D-PA 197 CG32678-PA 1..197 1..197 1044 100 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..197 1032 98 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..197 1028 98.5 Plus
Rab9Db-PA 197 CG9807-PA 1..197 1..197 1018 97 Plus
RabX2-PA 195 CG2885-PA 1..195 1..197 688 71.7 Plus