BS28906.complete Sequence
827 bp assembled on 2012-04-19
GenBank Submission: KX803669
> BS28906.complete
GAAGTTATCAGTCGACATGAAACTGTTCCTGCTAACTCTCTCCGCGGCTT
TGGCCCTGGTGGCCGCCTCCCCGACCGGTCTGAACCGCACCACCCTCCTG
TCCCAGGGAGCCGAGGGTCGCATTGTCAACGGCTACCCAGCGCCCGAGGG
CAAGGCTCCCTACATTGTGGGCCTGTTCATCCGTACCGATGGAAGCAACA
GTGGTGCCGTTGGTGCTGGTACCATCATTGCCAACGACTGGATCCTGACT
GCCGCCCATTGCTTGACCGGAGACTACGTGGAGATCCACTACGGATCCAA
CTGGGGCTGGAACGGTGCCTACAGGCAGACCGTCCGTCGCGACAACTTCA
TTAGCCACCCCGACTGGCCTTCCCAGGGCGGCCGAGACATTGGTCTGATC
CGCACTCCCCATGTCGACTTCAACGGACTGATCAACAAGATCCCTCTGCC
AAGCATGAACGAGCAGAACGACCGCTACCAGGACACCTGGTGCGTCGCTT
GCGGATGGGGTGGTATGGACAACGGAAACCTGGCCGACTGGCTGCAGTGC
GTCGATGTCCAGATCATCAGCAACAGCGAGTGCGAGCAGGCCTACGGCTC
GGTTGCCAGTACCGACATGTGCACCCGTCACGCCGACGGAAAGTCCGTGT
GCGGAGGTGACTCCGGTGGCCCCCTGGTTACACACGACAATGCTCGTCTC
GTCGGTGTGATCACCTTTGCCTCCGTCAGCTGCCACGACGGACCCTCTGG
CTACACCCGCGTCTCGGACTACCTAGAATGGATCCGCGACCAGACTGGCA
TCTCCTACTAAAAGCTTTCTAGACCAT
BS28906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18180-RA | 795 | CG18180-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG18179-RA | 807 | CG18179-PA | 97..807 | 101..811 | 1695 | 82.6 | Plus |
| CG8329-RA | 780 | CG8329-PA | 454..752 | 488..786 | 370 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18180-RA | 901 | CG18180-RA | 19..814 | 16..811 | 3980 | 100 | Plus |
| CG18179-RA | 870 | CG18179-RA | 115..826 | 101..812 | 1700 | 82.6 | Plus |
| CG8329-RA | 910 | CG8329-RA | 469..767 | 488..786 | 370 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9641031..9641826 | 16..811 | 3980 | 100 | Plus |
| 3L | 28110227 | 3L | 9639385..9640096 | 101..812 | 1700 | 82.6 | Plus |
| 3L | 28110227 | 3L | 9638580..9638878 | 488..786 | 370 | 74.9 | Plus |
| 2L | 23513712 | 2L | 4950101..4950299 | 688..493 | 285 | 77.4 | Minus |
| 2L | 23513712 | 2L | 4952284..4952347 | 811..748 | 200 | 87.5 | Minus |
| 3R | 32079331 | 3R | 30489091..30489152 | 114..175 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:31:31 has no hits.
BS28906.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:16 Download gff for
BS28906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18180-RA | 17..809 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:10 Download gff for
BS28906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18180-RA | 20..812 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:34 Download gff for
BS28906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18180-RA | 20..812 | 17..809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:34 Download gff for
BS28906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9641032..9641824 | 17..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:10 Download gff for
BS28906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9634132..9634924 | 17..809 | 100 | | Plus |
BS28906.pep Sequence
Translation from 16 to 810
> BS28906.pep
MKLFLLTLSAALALVAASPTGLNRTTLLSQGAEGRIVNGYPAPEGKAPYI
VGLFIRTDGSNSGAVGAGTIIANDWILTAAHCLTGDYVEIHYGSNWGWNG
AYRQTVRRDNFISHPDWPSQGGRDIGLIRTPHVDFNGLINKIPLPSMNEQ
NDRYQDTWCVACGWGGMDNGNLADWLQCVDVQIISNSECEQAYGSVASTD
MCTRHADGKSVCGGDSGGPLVTHDNARLVGVITFASVSCHDGPSGYTRVS
DYLEWIRDQTGISY*
BS28906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18180-PA | 264 | CG18180-PA | 1..264 | 1..264 | 1439 | 100 | Plus |
| CG18179-PA | 268 | CG18179-PA | 1..268 | 1..264 | 1221 | 83.6 | Plus |
| CG8329-PA | 259 | CG8329-PA | 4..258 | 2..264 | 874 | 61.6 | Plus |
| Jon25Bi-PB | 266 | CG8867-PB | 1..265 | 1..264 | 662 | 49.8 | Plus |
| Jon25Biii-PA | 258 | CG8871-PA | 1..258 | 1..264 | 649 | 50.4 | Plus |
