BS28907.complete Sequence
479 bp assembled on 2012-04-19
GenBank Submission: KX804437
> BS28907.complete
GAAGTTATCAGTCGACATGGATAATCTGGGCGTCGTGCTCCTGGTCCTGT
GCGCCTTCAGCTTCCTGCTCTTTCTCCTGCGAGTGCTTCTGATTGCCTGT
CGCTCGTACTCGATGTCGTTGCGCCCGAAGCAGGAACAAGCCCGTCGCCA
AATGGAGATCAATGTGACGAACAATTGCAACGGCGGCTCCGGAGGAGTCG
GAAACGTGTGCTCAAACAGCCAGAACGAAGTTAGTGTCCTGCCCAAGACC
TTGGATTTGCCGCCCAGCTACGACGAGGCCGCTTTTAGCGAGCGAAAGCA
GGACAGCACACTGACCATAGCCACCAGCTTGGAAGCGAGCAATCCCAATT
TGGCGGTTGGAATTAACGAACCACCGCCGGTTTACGAGGCGAACGTGGCC
ACAACCACCACTTCCACCACCACCACCGTATTTTTGGTCAACGGCCAACC
ACCAGTGGTGTAAAAGCTTTCTAGACCAT
BS28907.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4741-RB | 447 | CG4741-PB | 1..447 | 17..463 | 2235 | 100 | Plus |
| CG4741-RA | 624 | CG4741-PA | 296..624 | 135..463 | 1630 | 99.7 | Plus |
| CG4741-RC | 312 | CG4741-PC | 1..312 | 152..463 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4741-RB | 854 | CG4741-RB | 245..695 | 13..463 | 2240 | 99.8 | Plus |
| CG4741-RA | 881 | CG4741-RA | 394..722 | 135..463 | 1630 | 99.7 | Plus |
| CG4741-RC | 880 | CG4741-RC | 437..761 | 139..463 | 1625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24610960..24611284 | 463..139 | 1625 | 100 | Minus |
| 2R | 25286936 | 2R | 24614842..24614914 | 85..13 | 350 | 98.6 | Minus |
| 2R | 25286936 | 2R | 24614729..24614786 | 140..83 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:31:36 has no hits.
BS28907.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:17 Download gff for
BS28907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RB | 231..675 | 17..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:13 Download gff for
BS28907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RB | 249..693 | 17..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:35 Download gff for
BS28907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RB | 249..693 | 17..461 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:35 Download gff for
BS28907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24610962..24611282 | 141..461 | 100 | <- | Minus |
| 2R | 24614729..24614786 | 83..140 | 100 | <- | Minus |
| 2R | 24614845..24614910 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:13 Download gff for
BS28907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20498485..20498805 | 141..461 | 100 | <- | Minus |
| arm_2R | 20502252..20502309 | 83..140 | 100 | <- | Minus |
| arm_2R | 20502368..20502433 | 17..82 | 100 | | Minus |
BS28907.pep Sequence
Translation from 16 to 462
> BS28907.pep
MDNLGVVLLVLCAFSFLLFLLRVLLIACRSYSMSLRPKQEQARRQMEINV
TNNCNGGSGGVGNVCSNSQNEVSVLPKTLDLPPSYDEAAFSERKQDSTLT
IATSLEASNPNLAVGINEPPPVYEANVATTTTSTTTTVFLVNGQPPVV*
BS28907.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4741-PB | 148 | CG4741-PB | 1..148 | 1..148 | 750 | 100 | Plus |
| CG4741-PA | 207 | CG4741-PA | 62..207 | 6..148 | 569 | 78.8 | Plus |
| CG4741-PC | 103 | CG4741-PC | 1..103 | 46..148 | 530 | 100 | Plus |
