BS28909.complete Sequence
680 bp assembled on 2012-04-19
GenBank Submission: KX803539
> BS28909.complete
GAAGTTATCAGTCGACATGGACTTTTACTACATGCCAGGTGGTGGAGGAT
GCCGCACGGTCATCATGGTGGCCAAGGCTCTCGGCCTGGAGCTGAACAAG
AAGCTACTGAACACCATGGAGGGTGAACAATTGAAGCCGGAGTTTGTTAA
GCTCAATCCACAGCACACCATTCCCACGCTGGTGGACAACGGATTCTCCA
TCTGGGAGTCCCGGGCCATCGCCGTCTATCTGGTGGAGAAGTACGGCAAG
GATGACTATCTGTTGCCCAACGATCCCAAGAAGCGTGCCGTGATCAACCA
GCGTCTGTACTTCGACATGGGAACTCTGTACGAAAGCTTTGCCAAATACT
ACTATCCCCTTTTCCGCACTGGAAAGCCCGGATCGGATGAGGACTTGAAG
AGAATCGAAACCGCGTTTGGATTTCTCGACACCTTCCTGGAGGGCCAGGA
GTATGTGGCTGGCGACCAGCTCACCGTGGCGGACATTGCCATCCTGTCCA
CTGTCTCCACGTTCGAAGTTAGTGAGTTCGACTTCAGCAAGTACTCCAAT
GTCTCCAGGTGGTACGACAATGCCAAGAAGGTGACTCCAGGATGGGATGA
GAACTGGGAGGGCCTCATGGCGATGAAGGCGTTGTTCGATGCCCGTAAAT
TGGCGGCTAAGTGAAAGCTTTCTAGACCAT
BS28909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD2-RA | 648 | CG4181-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
| GstD5-RA | 651 | CG12242-PA | 31..591 | 47..607 | 1590 | 85.6 | Plus |
| GstD4-RA | 648 | CG11512-PA | 31..596 | 47..612 | 940 | 77.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD2-RA | 734 | CG4181-RA | 26..675 | 15..664 | 3250 | 100 | Plus |
| GstD5-RA | 840 | CG12242-RA | 28..622 | 13..607 | 1595 | 84.5 | Plus |
| GstD4-RA | 725 | CG11512-RA | 84..649 | 47..612 | 940 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12371996..12372645 | 15..664 | 3250 | 100 | Plus |
| 3R | 32079331 | 3R | 12375760..12376354 | 13..607 | 1595 | 84.5 | Plus |
| 3R | 32079331 | 3R | 12374183..12374748 | 47..612 | 940 | 77.7 | Plus |
| 3R | 32079331 | 3R | 12367977..12368535 | 608..50 | 815 | 76.4 | Minus |
| 3R | 32079331 | 3R | 12378603..12379051 | 65..510 | 665 | 77.1 | Plus |
| 3R | 32079331 | 3R | 12380090..12380628 | 71..609 | 595 | 74 | Plus |
| 3R | 32079331 | 3R | 12377276..12377505 | 121..350 | 415 | 78.7 | Plus |
| 3R | 32079331 | 3R | 12366552..12366777 | 359..134 | 350 | 77 | Minus |
| 3R | 32079331 | 3R | 12373130..12373385 | 65..320 | 350 | 75.8 | Plus |
| 3R | 32079331 | 3R | 12365202..12365406 | 357..153 | 320 | 77.1 | Minus |
| 3R | 32079331 | 3R | 12373494..12373673 | 429..608 | 300 | 77.8 | Plus |
| 3R | 32079331 | 3R | 12366292..12366348 | 613..557 | 195 | 89.5 | Minus |
| 3R | 32079331 | 3R | 12364951..12365082 | 608..477 | 180 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:31:41 has no hits.
BS28909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:18 Download gff for
BS28909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD2-RA | 28..674 | 17..663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:15 Download gff for
BS28909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD2-RA | 28..674 | 17..663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:37 Download gff for
BS28909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD2-RA | 28..674 | 17..663 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:37 Download gff for
BS28909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12371998..12372644 | 17..663 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:15 Download gff for
BS28909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8197720..8198366 | 17..663 | 100 | | Plus |
BS28909.pep Sequence
Translation from 16 to 663
> BS28909.pep
MDFYYMPGGGGCRTVIMVAKALGLELNKKLLNTMEGEQLKPEFVKLNPQH
TIPTLVDNGFSIWESRAIAVYLVEKYGKDDYLLPNDPKKRAVINQRLYFD
MGTLYESFAKYYYPLFRTGKPGSDEDLKRIETAFGFLDTFLEGQEYVAGD
QLTVADIAILSTVSTFEVSEFDFSKYSNVSRWYDNAKKVTPGWDENWEGL
MAMKALFDARKLAAK*
BS28909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD2-PA | 215 | CG4181-PA | 1..215 | 1..215 | 1134 | 100 | Plus |
| GstD5-PA | 216 | CG12242-PA | 1..215 | 1..215 | 930 | 79.1 | Plus |
| GstD4-PA | 215 | CG11512-PA | 1..215 | 1..215 | 877 | 75.3 | Plus |
| GstD1-PB | 209 | CG10045-PB | 2..209 | 1..208 | 802 | 70.2 | Plus |
| GstD1-PA | 209 | CG10045-PA | 2..209 | 1..208 | 802 | 70.2 | Plus |
