BS28910.complete Sequence
1289 bp assembled on 2012-12-19
GenBank Submission: KX805147
> BS28910.complete
GAAGTTATCAGTCGACATGTGCGCGTGCCTAATCGCTAAGATAATTCTAT
GTAGTTTTCGTTTGTATACAATAAGTGCCTTTTATATGTTAACGACGATG
TCAGCCAGCAGCAATACAAACAGCCTGATCGAGAAGGAGATCGACGACGA
GGACATGCTTTCGCCGATCAAGTCCAACAACCTGGTGGTGCGGGTCAACC
AGGACACGGACGACAACCTGCAGGCGCTATTCGACAGCGTCCTGAATCCG
GGTGACGCCAAGCGCCCGCTGCAGCTGCCCCTGCGCATGCGGAAGCTGCC
CAACTCCTTCTTCACGCCCCCGGCGCCCTCGCACTCGCGGGCCAACAGCG
CCGACTCCACCTACGACGCGGGCTCCCAGTCGAGCATCAACATCGGGAAC
AAGGCGTCCATCGTCCAGCAGCCAGATGGCCAGTCGCCCATCGCCGCCAT
CCCCCAGCTCCAGATTCAGCCGTCTCCCCAGCACAGCCGCCTGGCGATAC
ATCACTCCCGAGCCCGCAGCAGCCCCGCCTCGCTGCAGCAGAACTACAAT
GTGCGCGCCCGGAGCGACGCAGCAGCAGCCAACAATCCGAATGCCAATCC
GAGCAGCCAACAGCAGCCCGCTGGGCCCACTTTCCCAGAGAACAGTGCCC
AAGAGTTCCCCAGCGGCGCCCCGGCCAGCTCGGCCATTGATCTGGACGCC
ATGAACACCTGCATGTCGCAGGACATTCCCATGTCCATGCAGACAGTGCA
CAAGAAGCAGCGCTCCTACGACGTCATCAGCCCCATTCAGTTGAACCGCC
AACTAGGCGCCTTGCCGCCGGGATGGGAGCAAGCCAAGACCAATGATGGC
CAGATCTACTACTTGAATCATACTACAAAATCTACGCAGTGGGAGGATCC
CAGAATCCAATATCGCCAGCAGCAGCAAATCTTGATGGCCGAGCGAATAA
AGCAGAATGATGTTTTGCAAACTACAAAACAAACTACCACATCGACCATT
GCTAACAATTTGGGTCCACTGCCGGATGGTTGGGAGCAGGCAGTTACCGA
GTCCGGAGATCTTTACTTTATAAATCACATTGATCGAACGACTTCATGGA
ATGATCCCAGAATGCAATCTGGGCTTAGCGTGCTCGACTGCCCAGATAAC
TTAGTGTCTTCCCTCCAGATTGAGGATAATCTTTGCAGTAACTTGTTCAA
TGACGCACAGGCCATTGTAAATCCGCCGTCTTCCCACAAACCTGACGATT
TGGAATGGTATAAAATTAATTAAAAGCTTTCTAGACCAT
BS28910.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:05:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RF | 1188 | CG4005-PF | 1..1188 | 86..1273 | 5940 | 100 | Plus |
| yki-RG | 1188 | CG4005-PG | 1..1188 | 86..1273 | 5940 | 100 | Plus |
| yki-RD | 1032 | CG4005-PD | 1..875 | 86..960 | 4375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RF | 1525 | CG4005-RF | 171..1427 | 17..1273 | 6285 | 100 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..1362 | 17..1273 | 6285 | 100 | Plus |
| yki-RD | 1369 | CG4005-RD | 171..1114 | 17..960 | 4720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068315 | 867..17 | 4255 | 100 | Minus |
| 2R | 25286936 | 2R | 24066561..24066717 | 1115..959 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 24066073..24066180 | 1273..1166 | 540 | 100 | Minus |
| 2R | 25286936 | 2R | 24067163..24067254 | 959..868 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 24066261..24066313 | 1168..1116 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:05:13 has no hits.
BS28910.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-07 15:39:48 Download gff for
BS28910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RF | 171..1425 | 17..1271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:38 Download gff for
BS28910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 106..1360 | 17..1271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:55 Download gff for
BS28910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 106..1360 | 17..1271 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:55 Download gff for
BS28910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24066075..24066177 | 1169..1271 | 100 | <- | Minus |
| 2R | 24066261..24066313 | 1116..1168 | 100 | <- | Minus |
| 2R | 24066561..24066716 | 960..1115 | 100 | <- | Minus |
| 2R | 24067163..24067254 | 868..959 | 100 | <- | Minus |
| 2R | 24067465..24068315 | 17..867 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:38 Download gff for
BS28910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19953598..19953700 | 1169..1271 | 100 | <- | Minus |
| arm_2R | 19953784..19953836 | 1116..1168 | 100 | <- | Minus |
| arm_2R | 19954084..19954239 | 960..1115 | 100 | <- | Minus |
| arm_2R | 19954686..19954777 | 868..959 | 100 | <- | Minus |
| arm_2R | 19954988..19955838 | 17..867 | 100 | | Minus |
BS28910.pep Sequence
Translation from 16 to 1272
> BS28910.pep
MCACLIAKIILCSFRLYTISAFYMLTTMSASSNTNSLIEKEIDDEDMLSP
IKSNNLVVRVNQDTDDNLQALFDSVLNPGDAKRPLQLPLRMRKLPNSFFT
PPAPSHSRANSADSTYDAGSQSSINIGNKASIVQQPDGQSPIAAIPQLQI
QPSPQHSRLAIHHSRARSSPASLQQNYNVRARSDAAAANNPNANPSSQQQ
PAGPTFPENSAQEFPSGAPASSAIDLDAMNTCMSQDIPMSMQTVHKKQRS
YDVISPIQLNRQLGALPPGWEQAKTNDGQIYYLNHTTKSTQWEDPRIQYR
QQQQILMAERIKQNDVLQTTKQTTTSTIANNLGPLPDGWEQAVTESGDLY
FINHIDRTTSWNDPRMQSGLSVLDCPDNLVSSLQIEDNLCSNLFNDAQAI
VNPPSSHKPDDLEWYKIN*
BS28910.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-PF | 395 | CG4005-PF | 1..395 | 24..418 | 2060 | 100 | Plus |
| yki-PG | 395 | CG4005-PG | 1..395 | 24..418 | 2060 | 100 | Plus |
| yki-PD | 343 | CG4005-PD | 1..343 | 24..418 | 1712 | 86.6 | Plus |
| Su(dx)-PF | 949 | CG4244-PF | 397..511 | 266..367 | 218 | 37.4 | Plus |
| Su(dx)-PE | 949 | CG4244-PE | 397..511 | 266..367 | 218 | 37.4 | Plus |
| Su(dx)-PF | 949 | CG4244-PF | 476..553 | 263..365 | 187 | 35.9 | Plus |
