Clone BS28915 Report

Search the DGRC for BS28915

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:289
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG16995-RA
Protein status:BS28915.pep: full length peptide match
Sequenced Size:473

Clone Sequence Records

BS28915.complete Sequence

473 bp assembled on 2012-04-19

GenBank Submission: KX806169

> BS28915.complete
GAAGTTATCAGTCGACATGAGCGCTCAACAATTTGAGCAAGAAGTTCTTC
AAGCCCACAATTTATATCGGGCCAAGCATGGTGCTCAACCCTTGACTTTG
AGTCCCAAACTGAATCGATTGGCCACGGAATGGGCCAATTATTTGCTGTC
CAGAAATCGCATGGAACATCGACAGAACAGTGGATATGGTGAGAACATTT
ACATGGCCTCCGGGGGAAATCTGAAAGGTGCCGATGCCGTCAGATCCTGG
TACGAAGAGATTCGACAGTACAATTGGAATTCTCCGTCGTTTCAAGGTAA
CACCGGCCATTTCACTCAGGTGGTCTGGAAGAGCTCCACCGAGCTAGGCG
TGGGTTTTGCGAAGAGTGGCAGTACCATCTATGTTGTGTGCAACTACAAT
CCCCCTGGCAACTACAACAACTTGTTCAGGGAGAATGTCGCACCCCCAAT
GCAATAGAAGCTTTCTAGACCAT

BS28915.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG16995-RA 441 CG16995-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG16995-RA 721 CG16995-RA 80..521 17..458 2210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2308305..2308531 140..366 1135 100 Plus
2L 23513712 2L 2308142..2308249 32..139 540 100 Plus
2L 23513712 2L 2308579..2308672 365..458 470 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:32:07 has no hits.

BS28915.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:20 Download gff for BS28915.complete
Subject Subject Range Query Range Percent Splice Strand
CG16995-RA 80..520 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:20 Download gff for BS28915.complete
Subject Subject Range Query Range Percent Splice Strand
CG16995-RA 80..520 17..457 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:44 Download gff for BS28915.complete
Subject Subject Range Query Range Percent Splice Strand
CG16995-RA 80..520 17..457 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:44 Download gff for BS28915.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2308142..2308249 32..139 100 -> Plus
2L 2308305..2308531 140..366 100 -> Plus
2L 2308581..2308671 367..457 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:20 Download gff for BS28915.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2308142..2308249 32..139 100 -> Plus
arm_2L 2308305..2308531 140..366 100 -> Plus
arm_2L 2308581..2308671 367..457 100   Plus

BS28915.pep Sequence

Translation from 16 to 456

> BS28915.pep
MSAQQFEQEVLQAHNLYRAKHGAQPLTLSPKLNRLATEWANYLLSRNRME
HRQNSGYGENIYMASGGNLKGADAVRSWYEEIRQYNWNSPSFQGNTGHFT
QVVWKSSTELGVGFAKSGSTIYVVCNYNPPGNYNNLFRENVAPPMQ*

BS28915.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG16995-PA 146 CG16995-PA 1..146 1..146 791 100 Plus
CG4270-PA 170 CG4270-PA 31..168 6..143 374 48.6 Plus
CG34049-PB 306 CG34049-PB 146..282 7..143 314 45.3 Plus
CG31482-PA 195 CG31482-PA 23..162 7..146 289 41.3 Plus
CG4270-PB 142 CG4270-PB 31..141 6..116 286 46.8 Plus