Clone BS28917 Report

Search the DGRC for BS28917

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:289
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG4325-RA
Protein status:BS28917.pep: full length peptide match
Sequenced Size:509

Clone Sequence Records

BS28917.complete Sequence

509 bp assembled on 2012-04-19

GenBank Submission: KX804663

> BS28917.complete
GAAGTTATCAGTCGACATGGGCCGTAACAACGTCATCTGCACGATCTGCT
CGGAGCGGTTTCGCACCTCGGACAATATACAAGCCGGCAGCTGCGGACAC
GCGTTCCACGAGGACTGCCTAGACCACTGGAGAAAGCAATCAAGGACTTG
CCCTATCTGCCGCAGCCAGGATGCCGCCTACTTTCAGCTTTATCTGGACT
TTGAGGAGTTTCCGGAAAGTGCATCGGCTCAGGGTGGCAGTTGGGGCGGC
CATAATCGGAGCCAAGGTCACAGCAGCAGCAGCAGCAGCTGCAGCAGCAA
CAACAACAACAGTAACGACAACAGCAGCAGTGACGATTATATTGGAATTA
TGAGGGAGTACGAGAATCTACTTTACGAGACGGGCGTGTACCGAGAAGAG
ATCGAATATCTTAACCAGCGGATCGGAGCCCTTACTGTCCTCAATGCTGA
ACTCAGCAAACTACATGAATGTTCGGATTCGGATGTTGATTAAAAGCTTT
CTAGACCAT

BS28917.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4325-RB 477 CG4325-PB 1..477 17..493 2385 100 Plus
CG4325-RA 477 CG4325-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4325-RB 897 CG4325-RB 92..572 17..497 2405 100 Plus
CG4325-RA 583 CG4325-RA 92..572 17..497 2405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2043055..2043413 497..139 1795 100 Minus
X 23542271 X 2043606..2043727 138..17 610 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:32:11 has no hits.

BS28917.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:21 Download gff for BS28917.complete
Subject Subject Range Query Range Percent Splice Strand
CG4325-RA 92..566 17..491 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:22 Download gff for BS28917.complete
Subject Subject Range Query Range Percent Splice Strand
CG4325-RA 92..566 17..491 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:47 Download gff for BS28917.complete
Subject Subject Range Query Range Percent Splice Strand
CG4325-RA 92..566 17..491 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:47 Download gff for BS28917.complete
Subject Subject Range Query Range Percent Splice Strand
X 2043061..2043413 139..491 100 <- Minus
X 2043606..2043727 17..138 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:22 Download gff for BS28917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1937094..1937446 139..491 100 <- Minus
arm_X 1937639..1937760 17..138 100   Minus

BS28917.pep Sequence

Translation from 16 to 492

> BS28917.pep
MGRNNVICTICSERFRTSDNIQAGSCGHAFHEDCLDHWRKQSRTCPICRS
QDAAYFQLYLDFEEFPESASAQGGSWGGHNRSQGHSSSSSSCSSNNNNSN
DNSSSDDYIGIMREYENLLYETGVYREEIEYLNQRIGALTVLNAELSKLH
ECSDSDVD*

BS28917.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4325-PB 158 CG4325-PB 1..158 1..158 856 100 Plus
CG4325-PA 158 CG4325-PA 1..158 1..158 856 100 Plus
CG10916-PB 263 CG10916-PB 29..94 5..67 168 50 Plus
CG10916-PA 263 CG10916-PA 29..94 5..67 168 50 Plus