BS28918.complete Sequence
488 bp assembled on 2012-04-19
GenBank Submission: KX801015
> BS28918.complete
GAAGTTATCAGTCGACATGCTGGCCCTTTTGCTGATTGCCGGTCAAGGTC
AGGCGGCGCCGGTGAAGACCGAAGGTAGCACCTTGGGCCTTCTGGGCGGT
GGATTTGGTGGCAGTGTAGGACTTAGTGCCGGCATCGGAGTGGGTGGTGG
CCTGTATAGCGGTTTCGGAGGCGGTGGCTATCCTGGTGGCTATGCGAGTG
GCTACCCAGGTGGCTATGGTGGTGGCTACTCAGGCTATAACGGCTACGGA
GGCAGTGGATTCGGAGGTGGCTACTATCCAGGAGGAGGTTACTCCGGCTT
TGGACACAGGCCGCATCACCACGGAGGATACTATCCGGGCGGTGGATCGT
ACCACAATCAGGGCGGATCTTATGGCGGCCACTATAGTCAGTCACAGTAC
TCGAATGGATATTACGGAGGTGGTGGCTATGGAGGCGGTGGCTATGGAGG
CAATGGCTTCTTTGGAAAGTAAAAGCTTTCTAGACCAT
BS28918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edg91-RB | 456 | CG7539-PB | 1..456 | 17..472 | 2280 | 100 | Plus |
| Edg91-RA | 480 | CG7539-PA | 25..480 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edg91-RB | 546 | CG7539-RB | 12..468 | 17..473 | 2285 | 100 | Plus |
| Edg91-RA | 593 | CG7539-RA | 59..515 | 17..473 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17610934..17611390 | 473..17 | 2285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:32:20 has no hits.
BS28918.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:22 Download gff for
BS28918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edg91-RA | 59..512 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:23 Download gff for
BS28918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edg91-RA | 59..512 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:51 Download gff for
BS28918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edg91-RA | 59..512 | 17..470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:51 Download gff for
BS28918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17610937..17611390 | 17..470 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:23 Download gff for
BS28918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13436659..13437112 | 17..470 | 100 | | Minus |
BS28918.pep Sequence
Translation from 16 to 471
> BS28918.pep
MLALLLIAGQGQAAPVKTEGSTLGLLGGGFGGSVGLSAGIGVGGGLYSGF
GGGGYPGGYASGYPGGYGGGYSGYNGYGGSGFGGGYYPGGGYSGFGHRPH
HHGGYYPGGGSYHNQGGSYGGHYSQSQYSNGYYGGGGYGGGGYGGNGFFG
K*
BS28918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edg91-PB | 151 | CG7539-PB | 1..151 | 1..151 | 867 | 100 | Plus |
| Edg91-PA | 159 | CG7539-PA | 9..159 | 1..151 | 867 | 100 | Plus |
| CG14191-PA | 193 | CG14191-PA | 17..140 | 24..147 | 250 | 46.4 | Plus |
| CG17108-PA | 342 | CG17108-PA | 109..238 | 27..150 | 235 | 45.5 | Plus |
| CG5172-PD | 172 | CG5172-PD | 18..158 | 21..150 | 229 | 43.1 | Plus |
| CG14191-PA | 193 | CG14191-PA | 19..168 | 7..145 | 223 | 41.1 | Plus |
| CG17108-PA | 342 | CG17108-PA | 103..220 | 27..148 | 222 | 48.4 | Plus |
| CG14191-PA | 193 | CG14191-PA | 55..186 | 24..147 | 221 | 43.2 | Plus |
| CG17108-PA | 342 | CG17108-PA | 179..297 | 27..147 | 217 | 45.2 | Plus |
| CG17108-PA | 342 | CG17108-PA | 167..291 | 24..147 | 215 | 45.3 | Plus |
| CG17108-PA | 342 | CG17108-PA | 192..323 | 7..147 | 215 | 41.4 | Plus |
| CG17108-PA | 342 | CG17108-PA | 27..189 | 9..150 | 213 | 38.6 | Plus |
| CG17108-PA | 342 | CG17108-PA | 143..293 | 27..147 | 209 | 42.5 | Plus |
| CG17108-PA | 342 | CG17108-PA | 185..315 | 27..150 | 204 | 42.6 | Plus |
| CG17108-PA | 342 | CG17108-PA | 51..217 | 24..150 | 199 | 41.4 | Plus |
| CG14191-PA | 193 | CG14191-PA | 87..193 | 24..128 | 195 | 41.9 | Plus |
| CG17108-PA | 342 | CG17108-PA | 24..143 | 27..147 | 193 | 40.2 | Plus |
| CG17108-PA | 342 | CG17108-PA | 227..342 | 27..145 | 188 | 43.5 | Plus |
| CG17108-PA | 342 | CG17108-PA | 17..119 | 57..150 | 142 | 38.5 | Plus |
