BS28923.complete Sequence
911 bp assembled on 2012-05-22
GenBank Submission: KX801316
> BS28923.complete
GAAGTTATCAGTCGACATGTCCGAAGAAAAGAAGAATGGCGATGAATTAA
ACGACTTGCTGGACAGTGCTCTCCAGGATTTCGATAAAAGTGGTGCCGGT
GACCAAAAGGAGCCGTCCGCATCATCAGATGTGGCGACCAACGCTGGACC
TGAGGGCTCTGAGGATCCAGATGCGTTTTTCATTGAGCAGGCCAAGGTGC
TGGCCGATCGCATGAACACGCTCTTCGGAGGTCCGGACACGCCCAGTGGC
GATATTCCGCCGCTGCCCCAGGATCCCGACCAGATCATGGCCGGATTCAA
GAAGATGGCCGAAGCGGCAGCGCTCACCTTGAGCGGCGAAAATTCGGCCA
CCGACGAGGATGTCTCCAAGTATTCTGATAGCATTTCCCAGGCTCTCAAG
GGTCTGCAAGAGGGCTCCGAGAACCTGGCTGCTCCCGCCTCGGAGAACGA
CATAGCCAGCATGTTTGGTTCACTGAATCTTGAAGGGGCTGGCGAGGGTG
ATGGAAACATGTTCCTACCATTCATGGAGGGCATGATGCAGAGCCTGCTC
TCGGCGGAGATTCTGTTGCCCAGCATCCGGGAGCTGCTGGAGAAGTACCC
CAAGTACCTCGAGGAGAACGACGCCAAGCTCTCCGCTGAGGACAAGGAAA
GGTACCAGAAGCAGATGGAGCTGTACAAGGTGATTGAGGGGCATTTACAG
AGCGAGAAGACCGAGGATTCGGCCGCCGTGAAGCGAGAGAAGTTCCGCGT
CGTGCTGGACGACATGCGCAAACTGCAAGACTACGGCCAGCCGCCGCCAG
AGATTCTGGCCGAGACGGGCGGCGACTTGCCCTTCGGCGATCCCACTGCC
GGCGTAGCAGCCGGCGGACCCGGTCCCCAGTGCCCAACCATGTAGAAGCT
TTCTAGACCAT
BS28923.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex19-RC | 879 | CG5325-PC | 1..879 | 17..895 | 4320 | 99.4 | Plus |
| Pex19-RA | 879 | CG5325-PA | 1..879 | 17..895 | 4320 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex19-RC | 1596 | CG5325-RC | 480..1358 | 17..895 | 4320 | 99.4 | Plus |
| Pex19-RA | 1217 | CG5325-RA | 101..979 | 17..895 | 4320 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12094173..12094482 | 179..488 | 1505 | 99 | Plus |
| 2L | 23513712 | 2L | 12094767..12095012 | 650..895 | 1215 | 99.6 | Plus |
| 2L | 23513712 | 2L | 12094547..12094714 | 487..654 | 840 | 100 | Plus |
| 2L | 23513712 | 2L | 12093994..12094111 | 66..183 | 560 | 98.3 | Plus |
| 2L | 23513712 | 2L | 12093862..12093913 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:21:51 has no hits.
BS28923.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-22 13:51:25 Download gff for
BS28923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5325-RA | 92..970 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:52 Download gff for
BS28923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex19-RA | 101..979 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:23 Download gff for
BS28923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex19-RA | 101..979 | 17..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:23 Download gff for
BS28923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12094178..12094481 | 184..487 | 99 | -> | Plus |
| 2L | 12093862..12093910 | 17..65 | 100 | -> | Plus |
| 2L | 12093994..12094111 | 66..183 | 98 | -> | Plus |
| 2L | 12094548..12094711 | 488..651 | 100 | -> | Plus |
| 2L | 12094769..12095012 | 652..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:52 Download gff for
BS28923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12094178..12094481 | 184..487 | 99 | -> | Plus |
| arm_2L | 12094548..12094711 | 488..651 | 100 | -> | Plus |
| arm_2L | 12094769..12095012 | 652..895 | 99 | | Plus |
| arm_2L | 12093862..12093910 | 17..65 | 100 | -> | Plus |
| arm_2L | 12093994..12094111 | 66..183 | 98 | -> | Plus |
BS28923.pep Sequence
Translation from 16 to 894
> BS28923.pep
MSEEKKNGDELNDLLDSALQDFDKSGAGDQKEPSASSDVATNAGPEGSED
PDAFFIEQAKVLADRMNTLFGGPDTPSGDIPPLPQDPDQIMAGFKKMAEA
AALTLSGENSATDEDVSKYSDSISQALKGLQEGSENLAAPASENDIASMF
GSLNLEGAGEGDGNMFLPFMEGMMQSLLSAEILLPSIRELLEKYPKYLEE
NDAKLSAEDKERYQKQMELYKVIEGHLQSEKTEDSAAVKREKFRVVLDDM
RKLQDYGQPPPEILAETGGDLPFGDPTAGVAAGGPGPQCPTM*
BS28923.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex19-PC | 292 | CG5325-PC | 1..292 | 1..292 | 1496 | 100 | Plus |
| Pex19-PA | 292 | CG5325-PA | 1..292 | 1..292 | 1496 | 100 | Plus |
