BS28924.complete Sequence
938 bp assembled on 2012-05-22
GenBank Submission: KX804011
> BS28924.complete
GAAGTTATCAGTCGACATGTTGGACAATAATTCTTGTGCGCAAACCAATA
TTTTAACCAGTAAAGAAATGGCGAATAACAGCCCGACCCGCGGCTCTGTC
ATGCTGCTGACGCTGGTTTTGCTGCTACTGAGTAGAAAAATCGGTTTGGT
AGATGGGCACAAAGTTACGGCTACGTCAATTTCCAATCACAATTACCCGG
TAGAAGAGCATACAGTCATCACCCATGATGACTACATCCTTACTATTTAC
CGCATCCCATCATCCCCAAACCGAAGTCATCTAAATAGAGCTGGGCGAAG
GGCTGTAGTGTTTTTGCAACATGGCATCCTGAGTGCTTCCGACGACTGGA
TTATAAACGGACCAGAGGCGTCTCTGGCCTACATGCTTGCAGACGCCGGC
TACGATGTCTGGCTGGGCAATGCACGTGGCAACACGTACTCACGGCAGCA
CAAGCATATCCATCCGGACACGTCCGACTTTTGGCGTTTCAGCTGGCACG
AGATAGGTGTCTATGACCTCGCAGCCATGCTAGACTATGCGCTGGCGAAG
AGTCAGTCCAGCTCTTTGCATTTTGTTGCACACTCGCAGGGTACCACGGC
GTTCTTTGTACTTATGTCTTCTCTGCCTTTGTACAACGAAAAGTTGCGTT
CCGTGCACCTATTGGCGCCCATAGCTTACATGCGTGACCACTCTTTTATT
CTGTCCAAGCTGGGTGGCATTTTTCTGGGAACGCCGTCCTTTCTTAGCTG
GGTATTAGGAAGTATGGAGCTGCTACCTATTACTAATTTACAGAAACTGA
TATGTGAGCACATCTGTTCCAGTAGCTCCATGTTTAACTTTCTGTGCTCT
GGTCTGCTGGACTTCATCGGAGGGTGGGGAACACGACACTTGAACCAGGT
CAGGCGACTTCCGACAGTATGAAAGCTTTCTAGACCAT
BS28924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3635-RC | 906 | CG3635-PC | 1..906 | 17..922 | 4530 | 100 | Plus |
CG3635-RB | 1278 | CG3635-PB | 1..882 | 17..898 | 4410 | 100 | Plus |
Lip3-RA | 1185 | CG8823-PA | 229..347 | 323..441 | 220 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3635-RC | 1301 | CG3635-RC | 36..941 | 17..922 | 4530 | 100 | Plus |
CG3635-RB | 1381 | CG3635-RB | 36..917 | 17..898 | 4410 | 100 | Plus |
Lip3-RA | 1434 | CG8823-RA | 387..505 | 323..441 | 220 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22182737..22183468 | 169..900 | 3660 | 100 | Plus |
2L | 23513712 | 2L | 22175450..22175603 | 17..170 | 770 | 100 | Plus |
3R | 32079331 | 3R | 13371246..13371364 | 441..323 | 220 | 79 | Minus |
3L | 28110227 | 3L | 20460998..20461069 | 374..445 | 195 | 84.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:21:56 has no hits.
BS28924.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-22 13:51:26 Download gff for
BS28924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3635-RC | 41..940 | 22..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:55 Download gff for
BS28924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3635-RC | 41..940 | 22..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:24 Download gff for
BS28924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3635-RC | 41..940 | 22..921 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:24 Download gff for
BS28924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22175455..22175602 | 22..169 | 100 | -> | Plus |
2L | 22182738..22183466 | 170..898 | 100 | -> | Plus |
2L | 22183608..22183630 | 899..921 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:55 Download gff for
BS28924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22175455..22175602 | 22..169 | 100 | -> | Plus |
arm_2L | 22182738..22183466 | 170..898 | 100 | -> | Plus |
arm_2L | 22183608..22183630 | 899..921 | 100 | | Plus |
BS28924.pep Sequence
Translation from 16 to 921
> BS28924.pep
MLDNNSCAQTNILTSKEMANNSPTRGSVMLLTLVLLLLSRKIGLVDGHKV
TATSISNHNYPVEEHTVITHDDYILTIYRIPSSPNRSHLNRAGRRAVVFL
QHGILSASDDWIINGPEASLAYMLADAGYDVWLGNARGNTYSRQHKHIHP
DTSDFWRFSWHEIGVYDLAAMLDYALAKSQSSSLHFVAHSQGTTAFFVLM
SSLPLYNEKLRSVHLLAPIAYMRDHSFILSKLGGIFLGTPSFLSWVLGSM
ELLPITNLQKLICEHICSSSSMFNFLCSGLLDFIGGWGTRHLNQVRRLPT
V*
BS28924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3635-PC | 301 | CG3635-PC | 1..301 | 1..301 | 1579 | 100 | Plus |
CG3635-PB | 425 | CG3635-PB | 1..294 | 1..294 | 1545 | 100 | Plus |
CG8093-PB | 398 | CG8093-PB | 31..271 | 51..294 | 626 | 47.1 | Plus |
CG8093-PA | 398 | CG8093-PA | 31..271 | 51..294 | 626 | 47.1 | Plus |
Lip3-PA | 394 | CG8823-PA | 2..267 | 24..293 | 601 | 43.8 | Plus |