Clone BS28925 Report

Search the DGRC for BS28925

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:289
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG18190-RB
Protein status:BS28925.pep: full length peptide match
Sequenced Size:779

Clone Sequence Records

BS28925.complete Sequence

779 bp assembled on 2012-04-19

GenBank Submission: KX801351

> BS28925.complete
GAAGTTATCAGTCGACATGACTGATTTAAAGTTAACTGTGGCACTAACCA
GCGTTAATGCGGAGAATATGTCGCGGCACGACATGCTTCAGTGGGTGAAC
AACATGGTCCACGGCCACTTCAAGAAGATCGAAGAGCTGTGCTCAGGTGC
TGCCTACTGCCAGATGATGGAGATGATCTTTCCCAACTGCATTAACCTGA
AGCGCGTCAAGATGACCGCCAAACTAGAGCACGAGTATCTACACAATCTT
AGGCTCTTCCAGGAAGCCTTCAATCGCTTGAAGCTGGACAAAACGGTGCC
AATCGATCGACTGATCAAGGGACGCTTCCAGGACAACTTTGAGTTCCTGC
AGTGGTTCAAGAAGTTCTTCGACTCGCAGGCTCCGGGCTTGGAGAACATT
AAGTCGCTGGCCAATGCGCCGTTGGCAAAGCCCATAAAGCCGCGCCAATT
CGCCAAGGAGCGATCACCAGTCAACGCCAATGATGATGCGCTCAAAGAGC
TGATTGATGAAATGAAGAACCTAAGCCTGAAGCGGGAGGACATCATGGAG
GCCAGCAATCAGATCTACAACAAACTGCGCCTGGTCGAGGATTTGGTCAA
CGACATGATCAACAACAACCAGCTAGTTGAGTTGTGCAAACGCATTCAAG
CGGTGCTCTACAAAACGATAGATGGTGAAATCAACGAGGAACCCGTCGAG
GTTAATGAGGATAATGGTGATGAAGGCGCCGAACACGCGGATCCCAATGA
CGGATTATATTAGAAGCTTTCTAGACCAT

BS28925.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18190-RB 747 CG18190-PB 1..747 17..763 3705 99.7 Plus
Eb1-RF 894 CG3265-PF 285..348 310..373 200 87.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18190-RB 1077 CG18190-RB 281..1029 17..765 3715 99.7 Plus
Eb1-RF 1891 CG3265-RF 480..543 310..373 200 87.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18851955..18852576 765..144 3080 99.7 Minus
2R 25286936 2R 18852632..18852763 148..17 660 100 Minus
2R 25286936 2R 6753244..6753307 310..373 200 87.5 Plus
Blast to na_te.dros performed on 2014-11-28 04:32:38 has no hits.

BS28925.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:25 Download gff for BS28925.complete
Subject Subject Range Query Range Percent Splice Strand
CG18190-RB 227..973 17..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:28 Download gff for BS28925.complete
Subject Subject Range Query Range Percent Splice Strand
CG18190-RB 281..1027 17..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:57 Download gff for BS28925.complete
Subject Subject Range Query Range Percent Splice Strand
CG18190-RB 281..1027 17..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:57 Download gff for BS28925.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18851957..18852573 147..763 99 <- Minus
2R 18852634..18852763 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:28 Download gff for BS28925.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14739462..14740078 147..763 99 <- Minus
arm_2R 14740139..14740268 17..146 100   Minus

BS28925.pep Sequence

Translation from 16 to 762

> BS28925.pep
MTDLKLTVALTSVNAENMSRHDMLQWVNNMVHGHFKKIEELCSGAAYCQM
MEMIFPNCINLKRVKMTAKLEHEYLHNLRLFQEAFNRLKLDKTVPIDRLI
KGRFQDNFEFLQWFKKFFDSQAPGLENIKSLANAPLAKPIKPRQFAKERS
PVNANDDALKELIDEMKNLSLKREDIMEASNQIYNKLRLVEDLVNDMINN
NQLVELCKRIQAVLYKTIDGEINEEPVEVNEDNGDEGAEHADPNDGLY*

BS28925.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18190-PB 248 CG18190-PB 1..248 1..248 1294 100 Plus
Eb1-PE 290 CG3265-PE 1..276 4..220 417 33.9 Plus
Eb1-PF 297 CG3265-PF 1..123 4..126 417 57.7 Plus
Eb1-PG 291 CG3265-PG 1..121 4..124 414 57.9 Plus
Eb1-PA 291 CG3265-PA 1..121 4..124 414 57.9 Plus