BS28926.complete Sequence
902 bp assembled on 2012-04-19
GenBank Submission: KX804483
> BS28926.complete
GAAGTTATCAGTCGACATGGCTAATTGCAATCTGGTTAAAGTATTTCTGT
TGGTAACATTACTCGGCCTAAGTCTTATGCCATTTTGCCAGGCACATCCA
AAACGCGGTCGTAAGCGTGCCTTTGGTGTGGGTCTTTTGGGTGGAGCTTT
AGCTGGCGCTGTCATTGGCAACGTTGTGGCCAAGTCTCAACAGGCTCCCG
CTGCCGCTCCTGCTGCTCCGGTAGCCGTAGTGCATCACCACTATCCGCCA
GGTGCTCCTGCAGCACCTGCTCCGGCATCCCAGCCAGATCCCAAAAAGAT
GACTGTCATCGAAACTGGCACACCCGATGCCAACGGATGCTACACGCAAA
CTATTCGGGAACCCAATCCCAGCAATCCAAAGTCCTATACGGAGACACAG
CACCTGATCTGTCCCACGCTGCAGCAGGCCAACCAGCCTGCACCAGCAAT
CGCTCCAAGTATTGCCCAGGTTCCTGTGATGCCGCAGCCCTCACCAGTTT
TCCCTGCGGTATCTCCAGCTGCTGCTCCGGCCAATGTTGCTCCAGCTCCT
GCTGCTCCTGTTGCTCCGGCTGCCCCAGCTGCCCCTGTGGTGCCTGTCGC
TCCAGCTGCCCCTTCTGTTGTTCCTGTCGCTCCTGTCGCCCCTGTAGTGG
TTCATCCTGCTGCCCCCATACTCGTCCATCCTGCTCCAGTTCCAGTGGCA
GCTCCAGCTCCGGCCCCGATTGCTCCCGCAGTTCAGCAAAATCCTGGTCA
GCCACAGGTTATCCTACTCTCAAAGAAAACCGTTTATTATCCCAAAAAGC
GATCATCTGCACCCACACTGAATACTCCGCAGGGAGTGCTAGCCATGCTA
GTGATTTTCTACTCAATCAAGGCTTTTACACTTTAAAAGCTTTCTAGACC
AT
BS28926.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31496-RA | 810 | CG31496-PA | 1..810 | 77..886 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31496-RA | 1030 | CG31496-RA | 84..954 | 16..886 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7345517..7346278 | 125..886 | 3810 | 100 | Plus |
| 3R | 32079331 | 3R | 7345152..7345263 | 16..127 | 560 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2955 | 703..518 | 183 | 57.8 | Minus |
BS28926.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:06:24 Download gff for
BS28926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31496-RA | 85..952 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:25 Download gff for
BS28926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31496-RA | 85..952 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:46:21 Download gff for
BS28926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31496-RA | 85..952 | 17..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:46:21 Download gff for
BS28926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7345153..7345261 | 17..125 | 100 | -> | Plus |
| 3R | 7345518..7346276 | 126..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:25 Download gff for
BS28926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3170875..3170983 | 17..125 | 100 | -> | Plus |
| arm_3R | 3171240..3171998 | 126..884 | 100 | | Plus |
BS28926.pep Sequence
Translation from 16 to 885
> BS28926.pep
MANCNLVKVFLLVTLLGLSLMPFCQAHPKRGRKRAFGVGLLGGALAGAVI
GNVVAKSQQAPAAAPAAPVAVVHHHYPPGAPAAPAPASQPDPKKMTVIET
GTPDANGCYTQTIREPNPSNPKSYTETQHLICPTLQQANQPAPAIAPSIA
QVPVMPQPSPVFPAVSPAAAPANVAPAPAAPVAPAAPAAPVVPVAPAAPS
VVPVAPVAPVVVHPAAPILVHPAPVPVAAPAPAPIAPAVQQNPGQPQVIL
LSKKTVYYPKKRSSAPTLNTPQGVLAMLVIFYSIKAFTL*
BS28926.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31496-PA | 269 | CG31496-PA | 1..269 | 21..289 | 1401 | 100 | Plus |
| CG10953-PB | 278 | CG10953-PB | 70..244 | 61..235 | 217 | 38.6 | Plus |
| CG10953-PA | 278 | CG10953-PA | 70..244 | 61..235 | 217 | 38.6 | Plus |
| CG10953-PB | 278 | CG10953-PB | 44..247 | 61..259 | 212 | 35 | Plus |
| CG10953-PA | 278 | CG10953-PA | 44..247 | 61..259 | 212 | 35 | Plus |
| Cpn-PA | 842 | CG4795-PA | 12..220 | 60..256 | 194 | 33.9 | Plus |
| Cpn-PB | 864 | CG4795-PB | 12..220 | 60..256 | 194 | 33.9 | Plus |
| CG10953-PB | 278 | CG10953-PB | 30..172 | 141..259 | 173 | 39.3 | Plus |
| CG10953-PA | 278 | CG10953-PA | 30..172 | 141..259 | 173 | 39.3 | Plus |
| Cpn-PA | 842 | CG4795-PA | 7..147 | 141..267 | 161 | 38.4 | Plus |
| Cpn-PA | 842 | CG4795-PA | 79..273 | 48..240 | 160 | 33.7 | Plus |
| CG10953-PB | 278 | CG10953-PB | 28..119 | 156..243 | 152 | 46.4 | Plus |
| CG10953-PA | 278 | CG10953-PA | 28..119 | 156..243 | 152 | 46.4 | Plus |
