BS28928.complete Sequence
977 bp assembled on 2012-04-19
GenBank Submission: KX803521
> BS28928.complete
GAAGTTATCAGTCGACATGTTGCTCTTGGGCCTGAAATACGCTCTTCTAC
TGGCCATTACCGGCTGTTTCCTGGTGCCAATCCATGGATCAGGATCGGAT
ACTGACCAGGTCCTGCCGCACCGCATCTACCGTCTGCTGGACCGCCTCTC
CGGAGGACGCCGCCTGAGTGCCAGCTCTACATTCGCCCTGTTGCTCTCGC
AGTTTCTGATAAAACAGAAACTGCGTTACGTGGCGCCTACGCGTTACGAA
CGTCAGCTCTACTACCATCTGCTGCACAGGATGGAACACATCAGAAGGGG
ATCGGGTCTGGTTTCCAGGGAGCATGGTGTCCAGGGGGAGATTCTCAGCA
TTGCCTTTCAGGCGAATGTGTTGCTGCTGCCTCCCTCGCTGAAACTGGGC
GAACTGAATGCCAATGGGGAGTACGAGCAGCTGGCCGAGGTCTACCCGAA
AGTGGTCAACGAGGGCCAGCTGAACAGGACGCAGTCCGACCTCTGCCTCC
GGGACATTGTGGAACTGAAGCCACCCCACTGCAAGCTGCTCTCCGGCGAA
TGTTTGGAACTTTTGGCCAGTGATGCACCAGCCTACGGATACCAGAGAAC
CCATCAGGTCCTGCTGCTCTACGTGCTGGAGCATCAGGCATGTGCCCCCC
ACCTCAGCCCACCTCAGGTTTACGAACTGCTGGCCAAGAGTCAGTGCGAT
GAGGTGGAACGCGAGCAGAACGCCATCCGGAGCCTGGGGCTGCCAGTCGT
GTATCGCGATCTGTATCTGGAGCAAGCCACCATCTGCGGCCTGTTTGGCT
ACAATGAGTTTGTCAACTGGCGCAACGTAATGGAAATTGGCAGCTGGCTG
GAGGGGGACTCGCCGAAGGATATGGATGTATTGGCTGACGACGGCGATAG
CCAGCACATAAGCGATTTGGCCTTGGTCTTCTACACAAATGCACTGCTGC
TGCTGCACTAAAAGCTTTCTAGACCAT
BS28928.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8401-RB | 945 | CG8401-PB | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8401-RB | 1053 | CG8401-RB | 3..949 | 15..961 | 4735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16028605..16028805 | 15..215 | 1005 | 100 | Plus |
| 2R | 25286936 | 2R | 16029801..16029987 | 775..961 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 16029491..16029660 | 607..776 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 16029061..16029207 | 342..488 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 16028880..16029005 | 216..341 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 16029307..16029426 | 488..607 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:32:43 has no hits.
BS28928.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:26 Download gff for
BS28928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8401-RB | 10..947 | 22..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:29 Download gff for
BS28928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8401-RB | 10..947 | 22..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:58 Download gff for
BS28928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8401-RB | 10..947 | 22..959 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:58 Download gff for
BS28928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16028612..16028805 | 22..215 | 100 | -> | Plus |
| 2R | 16028880..16029005 | 216..341 | 100 | -> | Plus |
| 2R | 16029061..16029207 | 342..488 | 100 | -> | Plus |
| 2R | 16029308..16029425 | 489..606 | 100 | -> | Plus |
| 2R | 16029491..16029660 | 607..776 | 100 | -> | Plus |
| 2R | 16029803..16029985 | 777..959 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:29 Download gff for
BS28928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11916385..11916510 | 216..341 | 100 | -> | Plus |
| arm_2R | 11916566..11916712 | 342..488 | 100 | -> | Plus |
| arm_2R | 11916813..11916930 | 489..606 | 100 | -> | Plus |
| arm_2R | 11916996..11917165 | 607..776 | 100 | -> | Plus |
| arm_2R | 11917308..11917490 | 777..959 | 100 | | Plus |
| arm_2R | 11916117..11916310 | 22..215 | 100 | -> | Plus |
BS28928.pep Sequence
Translation from 16 to 960
> BS28928.pep
MLLLGLKYALLLAITGCFLVPIHGSGSDTDQVLPHRIYRLLDRLSGGRRL
SASSTFALLLSQFLIKQKLRYVAPTRYERQLYYHLLHRMEHIRRGSGLVS
REHGVQGEILSIAFQANVLLLPPSLKLGELNANGEYEQLAEVYPKVVNEG
QLNRTQSDLCLRDIVELKPPHCKLLSGECLELLASDAPAYGYQRTHQVLL
LYVLEHQACAPHLSPPQVYELLAKSQCDEVEREQNAIRSLGLPVVYRDLY
LEQATICGLFGYNEFVNWRNVMEIGSWLEGDSPKDMDVLADDGDSQHISD
LALVFYTNALLLLH*
BS28928.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8401-PB | 314 | CG8401-PB | 1..314 | 1..314 | 1627 | 100 | Plus |
