BS28931.complete Sequence
692 bp assembled on 2012-04-19
GenBank Submission: KX801598
> BS28931.complete
GAAGTTATCAGTCGACATGAAGTTGGACCTTACCATGAACGACCGTTTCA
ATCAGCGGTTTCAGTCGGTTTATGGCGGACTTGTTCCCCAGATCGCCCGA
CTGGTGCCCTTCAACGACTCTGAGGTGACCTGCATCCTGATGATCTACTA
CAAGTATAGTCTCCAGAATGGGCCCTCTGCTCGCCGAATAACATCCAGCC
AGTTTGTGAACATTGTGATCGGTTTCCAGCAGCTATATGACATGGACGTG
GTGGATCGCATCGTAACCCTAATCGCAGGTGGCAGGAAACACGTGACGCC
CATGGAATTTGTCAACTACATGACCATTCTAATGTCCCGCGACATGGAAC
GGAAAATGGAATTTGCATATATGGTTTACGACAAAAATGGCATGGGTATT
AATAGAGAGATCATTTCATCTTCGGTCGAGAGGTTTTTCGTCGGCGACGA
CGACGAGGTACTCGAGATGCGACTGGACATGGTCGATTTTCTACTCCTCA
AATTTGATGAAGACCAAGACGGCTACATCTCATTTGAGGAGTATAGATCG
ATCGTGTTGCAGCAGCCGCGTCTGCTGGAGTTTCTGGGTCCCATCTTTCC
CTCGGACGAGACGCGTCTGGTGGTGGCGTACTGCACTGCCATATACTCTC
ACATACCCGAAATGGGTACGTTGTAGAAGCTTTCTAGACCAT
BS28931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d-cup-RA | 660 | CG14387-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d-cup-RA | 1095 | CG14387-RA | 100..759 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12892055..12892413 | 17..375 | 1795 | 100 | Plus |
| 3R | 32079331 | 3R | 12892621..12892822 | 475..676 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 12892466..12892569 | 373..476 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:32:52 has no hits.
BS28931.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:26 Download gff for
BS28931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d-cup-RA | 61..720 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:31 Download gff for
BS28931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d-cup-RA | 100..759 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:01 Download gff for
BS28931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d-cup-RA | 100..759 | 17..676 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:01 Download gff for
BS28931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12892055..12892411 | 17..373 | 100 | -> | Plus |
| 3R | 12892467..12892568 | 374..475 | 100 | -> | Plus |
| 3R | 12892622..12892822 | 476..676 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:31 Download gff for
BS28931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8717777..8718133 | 17..373 | 100 | -> | Plus |
| arm_3R | 8718189..8718290 | 374..475 | 100 | -> | Plus |
| arm_3R | 8718344..8718544 | 476..676 | 100 | | Plus |
BS28931.pep Sequence
Translation from 16 to 675
> BS28931.pep
MKLDLTMNDRFNQRFQSVYGGLVPQIARLVPFNDSEVTCILMIYYKYSLQ
NGPSARRITSSQFVNIVIGFQQLYDMDVVDRIVTLIAGGRKHVTPMEFVN
YMTILMSRDMERKMEFAYMVYDKNGMGINREIISSSVERFFVGDDDEVLE
MRLDMVDFLLLKFDEDQDGYISFEEYRSIVLQQPRLLEFLGPIFPSDETR
LVVAYCTAIYSHIPEMGTL*
BS28931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d-cup-PA | 219 | CG14387-PA | 1..219 | 1..219 | 1124 | 100 | Plus |
| sunz-PA | 220 | CG15179-PA | 3..218 | 2..217 | 426 | 39.4 | Plus |
| CG15177-PA | 225 | CG15177-PA | 4..209 | 3..205 | 421 | 40.8 | Plus |
| sowi-PA | 217 | CG15178-PA | 4..209 | 3..206 | 420 | 37.9 | Plus |
| CG15177-PB | 217 | CG15177-PB | 4..201 | 3..205 | 381 | 39.3 | Plus |
