Clone BS28932 Report

Search the DGRC for BS28932

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:289
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG13749-RB
Protein status:BS28932.pep: full length peptide match
Sequenced Size:584

Clone Sequence Records

BS28932.complete Sequence

584 bp assembled on 2012-04-19

GenBank Submission: KX801080

> BS28932.complete
GAAGTTATCAGTCGACATGGTCTCGCCCAAACGGAGACTAATCGACGATT
CCATTGCTCCCTCAGCTGCCGATCTCCAGCGGACATACGACGGACATGAT
GGGCCTCACGTTTTCGGAACACCCGGCAATCAAGTCTACATTCGGGGGCA
GAACGATGGCGTATACAAGGTGCCAGGAGTAGGTGGTCAGTTCCATCACG
CATCGTCGCCAGCAGATCACGTCTATACGGATGAGCAGGGGATCACGTAT
GTGCACAAAAAAGACGCTGGAGGACCAGGAACACATACGCTTAGAGGACC
AGGTCTAGCTGCTGTACAGCCCGCCTACTCCACTGTGCAGCCTGCGGGAC
TTCGCAATCCCCAGTTTCATGTGGAGCGAAGTGGTCGCACTGTGGATGTT
GGTTCTGGAGGATTTGTCGTCCAAAGGAGCAGACGTAGTCCTCAGTTCCA
TGTGGAGCGTCCTGGTCGCACTGTGGATGTGGGTTCCGGAGGATTTTTTG
TCCAAAGGGGCAGGCGTAGTCCCCAGTTTCCTGTGGAGCGACCTTGGCAA
AGGGCTTTGAAGGACTGAAAGCTTTCTAGACCAT

BS28932.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13749-RB 552 CG13749-PB 1..552 17..568 2760 100 Plus
CG13749-RB 552 CG13749-PB 342..447 439..544 305 85.8 Plus
CG13749-RB 552 CG13749-PB 423..528 358..463 305 85.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13749-RB 897 CG13749-RB 75..627 16..568 2765 100 Plus
CG13749-RB 897 CG13749-RB 417..522 439..544 305 85.8 Plus
CG13749-RB 897 CG13749-RB 498..603 358..463 305 85.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8933817..8934108 277..568 1460 100 Plus
2R 25286936 2R 8933497..8933760 16..279 1320 100 Plus
2R 25286936 2R 8933979..8934084 358..463 305 85.8 Plus
2R 25286936 2R 8933898..8934003 439..544 305 85.8 Plus
Blast to na_te.dros performed on 2014-11-28 04:32:55 has no hits.

BS28932.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:27 Download gff for BS28932.complete
Subject Subject Range Query Range Percent Splice Strand
CG13749-RB 76..626 17..567 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:33 Download gff for BS28932.complete
Subject Subject Range Query Range Percent Splice Strand
CG13749-RB 76..626 17..567 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:02 Download gff for BS28932.complete
Subject Subject Range Query Range Percent Splice Strand
CG13749-RB 76..626 17..567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:02 Download gff for BS28932.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8933498..8933759 17..278 100 -> Plus
2R 8933819..8934107 279..567 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:33 Download gff for BS28932.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4821003..4821264 17..278 100 -> Plus
arm_2R 4821324..4821612 279..567 100   Plus

BS28932.pep Sequence

Translation from 16 to 567

> BS28932.pep
MVSPKRRLIDDSIAPSAADLQRTYDGHDGPHVFGTPGNQVYIRGQNDGVY
KVPGVGGQFHHASSPADHVYTDEQGITYVHKKDAGGPGTHTLRGPGLAAV
QPAYSTVQPAGLRNPQFHVERSGRTVDVGSGGFVVQRSRRSPQFHVERPG
RTVDVGSGGFFVQRGRRSPQFPVERPWQRALKD*

BS28932.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13749-PB 183 CG13749-PB 1..183 1..183 987 100 Plus
CG33470-PC 257 CG33470-PC 18..182 17..176 557 61.8 Plus
CG33470-PA 257 CG33470-PA 18..182 17..176 557 61.8 Plus
IM10-PC 257 CG18279-PC 18..182 17..176 557 61.8 Plus
IM10-PA 257 CG18279-PA 18..182 17..176 557 61.8 Plus