Clone BS28933 Report

Search the DGRC for BS28933

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:289
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptArpc3A-RC
Protein status:BS28933.pep: full length peptide match
Sequenced Size:566

Clone Sequence Records

BS28933.complete Sequence

566 bp assembled on 2012-04-19

GenBank Submission: KX800280

> BS28933.complete
GAAGTTATCAGTCGACATGCCGGCCTACCACTCGCAGATCAAGGAAGTGC
GCCAGCAGGTGGGCAACATGGCCATCCTGCCGCTGAGGACGCAGGTGCGC
GGGCCAGCGCCCAGTGCGAATATTGAGAGCGACATCATTGATGAGTCACT
GTACTACTTCAAAGCCAATGTCTTCTTTCGCACGTACGAAATCAAGTCCG
ACGTGGATCGCGTGCTCATCTATGTGACGCTCTACATAACAGAGTGCCTC
AAGAAGCTCAATCGCTCCACGAGCAAGGCCCAGGGACAGCAGGACATGTA
CAGCCTGGCCATCTCCAAGTTCGACATTCCCGGCGATGCTGGCTTCCCAT
TGAACGCCGTCTATGCCAAGCCGCAAACGGCCCAGGATGCGGATCTGATG
CGCCAGTACCTGCTGCAGCTGCGCCACGAAACCGGCAACCGGGTACTGGA
GAAGGTCTTCAACACCGAGGATGGCAAGCCCAATAAATGGTGGACCTGCT
TCGCGAAGAAAAAGTTCATGGAGAAGAGTCTGGCTGGACCTGGACAATAA
AAGCTTTCTAGACCAT

BS28933.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3A-RE 534 CG4560-PE 1..534 17..550 2670 100 Plus
Arpc3A-RC 534 CG4560-PC 1..534 17..550 2670 100 Plus
Arpc3B-RA 525 CG8936-PA 42..519 58..544 435 73.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3A-RE 1123 CG4560-RE 117..653 15..551 2685 100 Plus
Arpc3A-RC 814 CG4560-RC 117..653 15..551 2685 100 Plus
Arpc3B-RC 693 CG8936-RC 139..616 58..544 435 73.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15835195..15835551 195..551 1785 100 Plus
3R 32079331 3R 15834912..15835086 22..196 875 100 Plus
X 23542271 X 17104648..17104808 544..384 310 79.5 Minus
Blast to na_te.dros performed on 2014-11-28 04:33:08 has no hits.

BS28933.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:28 Download gff for BS28933.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3A-RC 119..650 17..548 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:35 Download gff for BS28933.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3A-RC 119..650 17..548 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:08 Download gff for BS28933.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3A-RC 119..650 17..548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:08 Download gff for BS28933.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15834907..15835086 17..196 98 -> Plus
3R 15835197..15835548 197..548 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:35 Download gff for BS28933.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11660629..11660808 17..196 98 -> Plus
arm_3R 11660919..11661270 197..548 100   Plus

BS28933.pep Sequence

Translation from 16 to 549

> BS28933.pep
MPAYHSQIKEVRQQVGNMAILPLRTQVRGPAPSANIESDIIDESLYYFKA
NVFFRTYEIKSDVDRVLIYVTLYITECLKKLNRSTSKAQGQQDMYSLAIS
KFDIPGDAGFPLNAVYAKPQTAQDADLMRQYLLQLRHETGNRVLEKVFNT
EDGKPNKWWTCFAKKKFMEKSLAGPGQ*

BS28933.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3A-PE 177 CG4560-PE 1..177 1..177 923 100 Plus
Arpc3A-PC 177 CG4560-PC 1..177 1..177 923 100 Plus
Arpc3B-PA 174 CG8936-PA 1..173 1..176 721 73.9 Plus
Arpc3B-PC 157 CG8936-PC 1..156 18..176 666 76.1 Plus
Arpc3B-PB 157 CG8936-PB 1..156 18..176 666 76.1 Plus