BS28933.complete Sequence
566 bp assembled on 2012-04-19
GenBank Submission: KX800280
> BS28933.complete
GAAGTTATCAGTCGACATGCCGGCCTACCACTCGCAGATCAAGGAAGTGC
GCCAGCAGGTGGGCAACATGGCCATCCTGCCGCTGAGGACGCAGGTGCGC
GGGCCAGCGCCCAGTGCGAATATTGAGAGCGACATCATTGATGAGTCACT
GTACTACTTCAAAGCCAATGTCTTCTTTCGCACGTACGAAATCAAGTCCG
ACGTGGATCGCGTGCTCATCTATGTGACGCTCTACATAACAGAGTGCCTC
AAGAAGCTCAATCGCTCCACGAGCAAGGCCCAGGGACAGCAGGACATGTA
CAGCCTGGCCATCTCCAAGTTCGACATTCCCGGCGATGCTGGCTTCCCAT
TGAACGCCGTCTATGCCAAGCCGCAAACGGCCCAGGATGCGGATCTGATG
CGCCAGTACCTGCTGCAGCTGCGCCACGAAACCGGCAACCGGGTACTGGA
GAAGGTCTTCAACACCGAGGATGGCAAGCCCAATAAATGGTGGACCTGCT
TCGCGAAGAAAAAGTTCATGGAGAAGAGTCTGGCTGGACCTGGACAATAA
AAGCTTTCTAGACCAT
BS28933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3A-RE | 534 | CG4560-PE | 1..534 | 17..550 | 2670 | 100 | Plus |
Arpc3A-RC | 534 | CG4560-PC | 1..534 | 17..550 | 2670 | 100 | Plus |
Arpc3B-RA | 525 | CG8936-PA | 42..519 | 58..544 | 435 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3A-RE | 1123 | CG4560-RE | 117..653 | 15..551 | 2685 | 100 | Plus |
Arpc3A-RC | 814 | CG4560-RC | 117..653 | 15..551 | 2685 | 100 | Plus |
Arpc3B-RC | 693 | CG8936-RC | 139..616 | 58..544 | 435 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15835195..15835551 | 195..551 | 1785 | 100 | Plus |
3R | 32079331 | 3R | 15834912..15835086 | 22..196 | 875 | 100 | Plus |
X | 23542271 | X | 17104648..17104808 | 544..384 | 310 | 79.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:33:08 has no hits.
BS28933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:28 Download gff for
BS28933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3A-RC | 119..650 | 17..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:35 Download gff for
BS28933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3A-RC | 119..650 | 17..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:08 Download gff for
BS28933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3A-RC | 119..650 | 17..548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:08 Download gff for
BS28933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15834907..15835086 | 17..196 | 98 | -> | Plus |
3R | 15835197..15835548 | 197..548 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:35 Download gff for
BS28933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11660629..11660808 | 17..196 | 98 | -> | Plus |
arm_3R | 11660919..11661270 | 197..548 | 100 | | Plus |
BS28933.pep Sequence
Translation from 16 to 549
> BS28933.pep
MPAYHSQIKEVRQQVGNMAILPLRTQVRGPAPSANIESDIIDESLYYFKA
NVFFRTYEIKSDVDRVLIYVTLYITECLKKLNRSTSKAQGQQDMYSLAIS
KFDIPGDAGFPLNAVYAKPQTAQDADLMRQYLLQLRHETGNRVLEKVFNT
EDGKPNKWWTCFAKKKFMEKSLAGPGQ*
BS28933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3A-PE | 177 | CG4560-PE | 1..177 | 1..177 | 923 | 100 | Plus |
Arpc3A-PC | 177 | CG4560-PC | 1..177 | 1..177 | 923 | 100 | Plus |
Arpc3B-PA | 174 | CG8936-PA | 1..173 | 1..176 | 721 | 73.9 | Plus |
Arpc3B-PC | 157 | CG8936-PC | 1..156 | 18..176 | 666 | 76.1 | Plus |
Arpc3B-PB | 157 | CG8936-PB | 1..156 | 18..176 | 666 | 76.1 | Plus |