BS28942.complete Sequence
830 bp assembled on 2012-04-19
GenBank Submission: KX801105
> BS28942.complete
GAAGTTATCAGTCGACATGGCCGAACTGGACGATTTCTTCGCGAAAAAGG
ACAAGAAGAAGTCCAAGAACAAGACTAAGTTCGTGACCGCCGACGAGATG
GTGAAGAACCTGGAGGACGGCACCAAGCGCGAGGTGGTCAAGCCCAAAAA
ACCTGAGGTAGCCGCTGGCGGCGTGGCAGTAGTAGGCGAAAACGAGAATA
GCGGCACCAAGGTGCCAGAGTCCGCCCCGCCCGTCGAGGAGGAATGGAAG
GAGTTCGAGGAGGAGCAGCGCAAGGACTACAGTGGCTTAAAGATCGGCCA
GCTGAGCACCATAACTGCCCAGGAAAGTTCCGAGTCGCAAGCTGCTCGAG
TGCCCTCTGCCCCGGACGGCGGCAACTACAATGAGGACGATGAGGACAGC
AATGGGTATGACAACGCGGACGTAAACAAGGAGCGCGTCGGCCACGGACC
CTGGAAAAAAGTTGTCCCAGCCGAGGAGGTAATGCAGATTCCGGTGCCCG
TGGAGGTGGAAAAGCACTCGTCCAAGACCTACGTTTCACCCGCGCTACGA
TACAGCCAGCAGGCCGGAAGTGGACTGGGAGGCGGCCCTACTGGGGGGGC
ATTGCGTCCACGACGCGCCGCCCCCGACATCACCAATACCGAGTTTTTCC
CAACACTAAGTGCGGCGCGTCCGGAGGAACAGCGCAAGAAGAAAAACGAA
CCCGCCTTCGAAGAAGTCCGTCACGGAAGCCGGTTCCAGCGTGTTCAGGA
GTCCACGGCTGCCCCGGTGGCGGCCTCCAACCGATTCCAGTCGCTTGACG
ACGAAGCAAGCTAGAAGCTTTCTAGACCAT
BS28942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3760-RC | 798 | CG3760-PC | 1..798 | 17..814 | 3930 | 99.5 | Plus |
| CG3760-RB | 798 | CG3760-PB | 1..798 | 17..814 | 3930 | 99.5 | Plus |
| CG3760-RD | 795 | CG3760-PD | 1..795 | 17..814 | 3850 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3760-RC | 1240 | CG3760-RC | 201..999 | 16..814 | 3935 | 99.5 | Plus |
| CG3760-RB | 1128 | CG3760-RB | 89..887 | 16..814 | 3935 | 99.5 | Plus |
| CG3760-RD | 1039 | CG3760-RD | 89..884 | 16..814 | 3855 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24939271..24939528 | 557..814 | 1245 | 98.8 | Plus |
| 2R | 25286936 | 2R | 24938970..24939217 | 309..556 | 1210 | 99.2 | Plus |
| 2R | 25286936 | 2R | 24938460..24938673 | 16..229 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 24938759..24938842 | 229..312 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:33:47 has no hits.
BS28942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:32 Download gff for
BS28942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RB | 123..920 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:43 Download gff for
BS28942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RB | 90..887 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:23 Download gff for
BS28942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RB | 90..887 | 17..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:23 Download gff for
BS28942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24938461..24938673 | 17..229 | 100 | -> | Plus |
| 2R | 24938760..24938842 | 230..312 | 100 | -> | Plus |
| 2R | 24938974..24939217 | 313..556 | 99 | -> | Plus |
| 2R | 24939271..24939528 | 557..814 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:43 Download gff for
BS28942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20825984..20826196 | 17..229 | 100 | -> | Plus |
| arm_2R | 20826283..20826365 | 230..312 | 100 | -> | Plus |
| arm_2R | 20826497..20826740 | 313..556 | 99 | -> | Plus |
| arm_2R | 20826794..20827051 | 557..814 | 98 | | Plus |
BS28942.pep Sequence
Translation from 16 to 813
> BS28942.pep
MAELDDFFAKKDKKKSKNKTKFVTADEMVKNLEDGTKREVVKPKKPEVAA
GGVAVVGENENSGTKVPESAPPVEEEWKEFEEEQRKDYSGLKIGQLSTIT
AQESSESQAARVPSAPDGGNYNEDDEDSNGYDNADVNKERVGHGPWKKVV
PAEEVMQIPVPVEVEKHSSKTYVSPALRYSQQAGSGLGGGPTGGALRPRR
AAPDITNTEFFPTLSAARPEEQRKKKNEPAFEEVRHGSRFQRVQESTAAP
VAASNRFQSLDDEAS*
BS28942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3760-PC | 265 | CG3760-PC | 1..265 | 1..265 | 1367 | 100 | Plus |
| CG3760-PB | 265 | CG3760-PB | 1..265 | 1..265 | 1367 | 100 | Plus |
| CG3760-PD | 264 | CG3760-PD | 1..264 | 1..265 | 1350 | 99.6 | Plus |
| CG3760-PA | 271 | CG3760-PA | 1..271 | 1..265 | 1350 | 97.8 | Plus |
| CG4892-PA | 190 | CG4892-PA | 28..185 | 67..217 | 144 | 29.4 | Plus |
