BS28944.complete Sequence
1388 bp assembled on 2012-04-19
GenBank Submission: KX805115
> BS28944.complete
GAAGTTATCAGTCGACATGGCTGGGACTTTTACCCCGCTGTTCTTCGTCT
TTCTGCGGAAGAATTTGCTCTACTTGCAACGCAACTTGCTGCCCCTGCTC
CTTATCTGCTCCGGATTTGCCGGAGTACTCACCGCGTACCTCCACTGGTC
CGTCAAGCCCGTGCTTCACCAAATTAACCAGTTTGAAGCAAAGAATGAAA
TGGTTCTTAGAGAATTGTACTTTCCCGGTAATGAGCTGGATTACATTTAC
TACTCACCCATCTCTCCCAATGTAGAGGACATTATGGATCTCCTGCGTGT
AGATCTGGGAATTATACCAGAGCGACTTCGGCCCAACAACAACAGCTTCG
AGATGCAGCTGGAGATGGAGCAACAGTGCCGTGGAAGCTGCTTCGCAATT
GACTTCCACCGGGTACCGAACCGTGGCTCTGACAGAAAGTTCCGATACAG
CCTCAGCTCAAATCAGATGCGCATTTCGCCCAGAAAGCGATTTGTGAACG
ACGAGGAAATTTATCACCAGATAGATGATGATGATTATATTCGTTCCGGA
TTCCTGTCCTTGCAACACATATTGGACAAACAGTATATGAAATACCAGGA
GCTCGGGAAAGACTTTGAGGTGGTGGTCAGCTCGATGCCCAACATGGAGG
TCATCAGCATGGATAGTCATCGATTGACATATTTCGGAACACTGTGCAGC
ATTCTATTCAATGTGGTCCTACTAAGCAGCTTTGTGGTGCCCTTTGTGGA
GGAGAAGCAAAACGGACTGAAGGAGTTTCTCAACCTGGTCACGCCCATGA
GTTTCCTCAACGGCCTCACTTTCTTTCTCATTCGGTTTGTGTGCTACACA
TTGCTTATGATCTTTGTCCTGGTCGTTGCATATTTATACAAGGCCCTGGG
CTCCATCTGCTTTGCTTACGTGGCAGTGTTGTTTCTGCTTTACATTTTGT
CAACCATGTCGTATGCTTATCTGATCTCTATTTGCTTCCACTCAGTTTTC
TATGCGAAAATCGGAGGGCTGGCAATGCTAATAATTCCCTATGCATTCTC
ATTTGTTCGAAGCTGGGCCACATCGCTGGCATTTGTGTGTTTTAGCACGA
ATACCTTTCTGGAGGGATTGGATATTTTTCAGACATTTTCAAATAAGCAT
CGCGAATTCGGTGCTGTGGATGTATTTCGCGTAATCAAAAGCAATTCCTC
AACGATGTTTTCGGTCTACGTGGTTCTCGTCTTTCAATCCTTTTTGTATG
CCATGCTCTACAACTATTTGGGTTGTGTTTTTCCCGGTCCTGGTGGACTA
AAGCGACCGATGTTCTTTTTCCTAGATTTCCGTATCGGTTATCGGCTGCA
TAACCAAACAGGGTTAAATTAAAAGCTTTCTAGACCAT
BS28944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31731-RC | 1356 | CG31731-PC | 1..1356 | 17..1372 | 6780 | 100 | Plus |
| CG31731-RB | 4794 | CG31731-PB | 1..1317 | 17..1327 | 6460 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31731-RC | 1589 | CG31731-RC | 87..1442 | 17..1372 | 6780 | 100 | Plus |
| CG31731-RB | 5141 | CG31731-RB | 87..1403 | 17..1327 | 6460 | 99.5 | Plus |
| CG16890-RD | 1184 | CG16890-RD | 1..53 | 185..133 | 265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13785049..13785521 | 523..995 | 2365 | 100 | Plus |
| 2L | 23513712 | 2L | 13784786..13784986 | 324..524 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 13784170..13784352 | 17..199 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 13785797..13785975 | 1149..1327 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 13785577..13785732 | 993..1148 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 13784471..13784595 | 200..324 | 625 | 100 | Plus |
| 2L | 23513712 | 2L | 13786210..13786254 | 1328..1372 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:34:06 has no hits.
BS28944.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:32 Download gff for
BS28944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31731-RC | 82..1435 | 17..1370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:46 Download gff for
BS28944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31731-RC | 87..1440 | 17..1370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:29 Download gff for
BS28944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31731-RC | 87..1440 | 17..1370 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:29 Download gff for
BS28944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13784170..13784352 | 17..199 | 100 | -> | Plus |
| 2L | 13784471..13784594 | 200..323 | 100 | -> | Plus |
| 2L | 13784786..13784986 | 324..524 | 100 | -> | Plus |
| 2L | 13785051..13785521 | 525..995 | 100 | -> | Plus |
| 2L | 13785580..13785732 | 996..1148 | 100 | -> | Plus |
| 2L | 13785797..13785975 | 1149..1327 | 100 | -> | Plus |
| 2L | 13786210..13786252 | 1328..1370 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:46 Download gff for
BS28944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13784170..13784352 | 17..199 | 100 | -> | Plus |
| arm_2L | 13784471..13784594 | 200..323 | 100 | -> | Plus |
| arm_2L | 13784786..13784986 | 324..524 | 100 | -> | Plus |
| arm_2L | 13785051..13785521 | 525..995 | 100 | -> | Plus |
| arm_2L | 13785580..13785732 | 996..1148 | 100 | -> | Plus |
| arm_2L | 13785797..13785975 | 1149..1327 | 100 | -> | Plus |
| arm_2L | 13786210..13786252 | 1328..1370 | 100 | | Plus |
BS28944.pep Sequence
Translation from 16 to 1371
> BS28944.pep
MAGTFTPLFFVFLRKNLLYLQRNLLPLLLICSGFAGVLTAYLHWSVKPVL
HQINQFEAKNEMVLRELYFPGNELDYIYYSPISPNVEDIMDLLRVDLGII
PERLRPNNNSFEMQLEMEQQCRGSCFAIDFHRVPNRGSDRKFRYSLSSNQ
MRISPRKRFVNDEEIYHQIDDDDYIRSGFLSLQHILDKQYMKYQELGKDF
EVVVSSMPNMEVISMDSHRLTYFGTLCSILFNVVLLSSFVVPFVEEKQNG
LKEFLNLVTPMSFLNGLTFFLIRFVCYTLLMIFVLVVAYLYKALGSICFA
YVAVLFLLYILSTMSYAYLISICFHSVFYAKIGGLAMLIIPYAFSFVRSW
ATSLAFVCFSTNTFLEGLDIFQTFSNKHREFGAVDVFRVIKSNSSTMFSV
YVVLVFQSFLYAMLYNYLGCVFPGPGGLKRPMFFFLDFRIGYRLHNQTGL
N*
BS28944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31731-PC | 451 | CG31731-PC | 1..451 | 1..451 | 2348 | 100 | Plus |
| CG31731-PB | 1597 | CG31731-PB | 1..439 | 1..437 | 2251 | 99.3 | Plus |
| CG1718-PD | 1692 | CG1718-PD | 189..473 | 171..434 | 157 | 21.7 | Plus |
| CG1718-PC | 1709 | CG1718-PC | 189..473 | 171..434 | 157 | 21.7 | Plus |
| CG1718-PB | 1714 | CG1718-PB | 211..495 | 171..434 | 157 | 21.7 | Plus |
