BS28946.complete Sequence
1490 bp assembled on 2012-04-19
GenBank Submission: KX805277
> BS28946.complete
GAAGTTATCAGTCGACATGAGAACAATGCCCGCCCATCCCCACCAGATTC
CCGTATTCCTGTCGAAGAACCTGAGGGACAGCCTGTATCTCTTTCAATAC
CCCACGAAAACGGAGCTCCCCAACCACGATGACTCCGTGATTGTCAATTG
TTGTGTAAAACCAATCGCCCAGGAGGTGAAGGTGGACTTCGGCCTGGACA
TTGAGTCGGCCCACTTCGATCGCTTCAAGGGCGAGCAATTTGCGGTGGCC
GCCGACGGAAAGAACACCTATGGAGCAGTTCCACCAAAGGGTCAGGAGCG
ACCCACCTACAAACGTGGCATCATGGACAAACAGGCCTTCACAAGCTCGC
GTTCCATAACCGATGTGGCCAAGTACATAGTGGGCATCTTTACGGATCGG
GAGGTGCATCTGTCGCCACTTACATCCATAGTCCAAATGCGACCCGTTCT
CAGTCACTTCGATAAGGACGACAAGCGCAAGAAGGCGGAACTGAAGGCTC
AAACGGAGGACACGGACGATGACGAGGTGCTGCAGCAGGTCACGGTTAAA
TTTGCACGAGGAAATGCCAAAAACAGCGGAAAGGAGCAACGTGTCGGCAC
CTACGACAGTTTCGTCCAGCGAATTGCGGATGAGCCGTGGTGCGAGGCCT
ACTGGCACTCGAGGGGCACGCCCACCGCCGAACTGGAGCGCCAGAAGCTC
TTTGCCACCAGTCATCACGGCAGTTCCTCTTTGGCTCTCGCTCCTGACGA
ATATCTTCGAAAGCTTCTGCCCTACGACGAGCATGTGCAGACGGTAGCCC
CAGCAGCTGCTTCTGCTGCCGCCCAAGTACTTCCCGTCTACAACAAGGCC
ATGCTTAAGTCTATGCCGCTGCTGGAACAGCTTACAGTGCTACTGAGAGA
TGCGCGGATGCTCTCGTTCAGCGACGTCATTAGTATTCTCGCGGAGCACG
TGGATCCGCATGTGGCTGCCGACAAGGTGCTGGCTTTGCTGCCCCAGGTG
GGCATCCTACTGCACGGCAACTGGGTGCCGAAATCCGAGGTGGTCTTTCC
CGAGAAGGTGCTTTCCCATGCGAACGGTGTGTCCGCAGAGCAGATGATTC
GCGCCAGAGATTATATACTCTTTCGTTTCTCCCGCACGCCCTACCTGTTC
CGAGCTCAGGTAATGGCCGCCACCCAGTTACCTCCTGCGGAAACACTTGA
CGTTTTGAAGACTGTGGCCCGGGTGAATAACACAAAACGGTGGGAGCTGC
TACTGCCACCCGACAAGGAGTTCGAGCAAAAGTACCCGGAACTGGTCAGC
CGACAGGAGTACCACTGGACCGCTTCCGAGCAGCACTACAATGAAATGGA
CTGGGCTAGGGAAACCAAACGTGTTCGGAAACGTTCGACGAGGAAGAGCG
AATCCCAGTCACTGACTTCAGCCATGCCGCCGCCCGCAATGAATCACTCA
ACAACTGGCTCCGTGGATGCGTAGAAGCTTTCTAGACCAT
BS28946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sin-RC | 1458 | CG10582-PC | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Sin-RA | 1461 | CG10582-PA | 32..1461 | 45..1474 | 7150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sin-RC | 1673 | CG10582-RC | 126..1584 | 16..1474 | 7295 | 100 | Plus |
Sin-RA | 1614 | CG10582-RA | 96..1525 | 45..1474 | 7150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21031950..21033051 | 16..1117 | 5510 | 100 | Plus |
3L | 28110227 | 3L | 21033116..21033472 | 1118..1474 | 1785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:33:18 has no hits.
BS28946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:29 Download gff for
BS28946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sin-RC | 113..1570 | 17..1474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:38 Download gff for
BS28946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sin-RC | 127..1584 | 17..1474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:11 Download gff for
BS28946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sin-RC | 127..1584 | 17..1474 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:11 Download gff for
BS28946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21031951..21033051 | 17..1117 | 100 | -> | Plus |
3L | 21033116..21033472 | 1118..1474 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:38 Download gff for
BS28946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21025051..21026151 | 17..1117 | 100 | -> | Plus |
arm_3L | 21026216..21026572 | 1118..1474 | 100 | | Plus |
BS28946.pep Sequence
Translation from 16 to 1473
> BS28946.pep
MRTMPAHPHQIPVFLSKNLRDSLYLFQYPTKTELPNHDDSVIVNCCVKPI
AQEVKVDFGLDIESAHFDRFKGEQFAVAADGKNTYGAVPPKGQERPTYKR
GIMDKQAFTSSRSITDVAKYIVGIFTDREVHLSPLTSIVQMRPVLSHFDK
DDKRKKAELKAQTEDTDDDEVLQQVTVKFARGNAKNSGKEQRVGTYDSFV
QRIADEPWCEAYWHSRGTPTAELERQKLFATSHHGSSSLALAPDEYLRKL
LPYDEHVQTVAPAAASAAAQVLPVYNKAMLKSMPLLEQLTVLLRDARMLS
FSDVISILAEHVDPHVAADKVLALLPQVGILLHGNWVPKSEVVFPEKVLS
HANGVSAEQMIRARDYILFRFSRTPYLFRAQVMAATQLPPAETLDVLKTV
ARVNNTKRWELLLPPDKEFEQKYPELVSRQEYHWTASEQHYNEMDWARET
KRVRKRSTRKSESQSLTSAMPPPAMNHSTTGSVDA*
BS28946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sin-PC | 485 | CG10582-PC | 1..485 | 1..485 | 2515 | 100 | Plus |
Sin-PA | 486 | CG10582-PA | 11..486 | 10..485 | 2458 | 99.8 | Plus |