BS28948.complete Sequence
560 bp assembled on 2012-04-19
GenBank Submission: KX801659
> BS28948.complete
GAAGTTATCAGTCGACATGGCGAGAGGTCTTGTAATTGGAATTTGTTGGA
CTTTACTATGGTCAATATTCGTAGCTGGAGATTTTCAATTGCAAAATGTG
ATTTGCGAGTCATTTGACAACGCGATTACGAACTTCAGCCGCTGCGAGAT
GAAGTTCATTCGAAGGGGCGTGGCTGCCTTCTATATGGTTTGGAAACTTT
ACAATGTGCCAATCAAGAGCGTGGACATAAATGTCGCATTGTACAAGAAA
TCGAACGGATATCGACCATTTCTCTTTAACCAGACCCTGGATTTTTGCTA
CTACATGCGGAATCCGCGAGCTCATCCATTGATCTATATGATGCACAAGG
TATTTATGCAAGCATCCAACATAAATCACTCCTGTCCATATGATCACGAT
TTAATAATCAATGAGTTTATCTACAAGAAGAACGACTTGAAAGATCTGCC
CATACCGAATGGCGATTACATGATAAGAGTGAAAGTGGCATTTGACAAGG
AATATCGAACATCCATCAAGATTTACGCAAAGAGAACGGATTGAAAGCTT
TCTAGACCAT
BS28948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33700-RC | 528 | CG33700-PC | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33700-RC | 1116 | CG33700-RC | 468..996 | 16..544 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9514454..9514832 | 394..16 | 1895 | 100 | Minus |
| 3L | 28110227 | 3L | 9514239..9514388 | 544..395 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 9513669..9513960 | 307..16 | 215 | 71.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:33:31 has no hits.
BS28948.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:30 Download gff for
BS28948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33700-RC | 469..995 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:40 Download gff for
BS28948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33700-RC | 469..995 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:16 Download gff for
BS28948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33700-RC | 469..995 | 17..543 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:16 Download gff for
BS28948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9514240..9514388 | 395..543 | 100 | <- | Minus |
| 3L | 9514454..9514831 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:40 Download gff for
BS28948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9507340..9507488 | 395..543 | 100 | <- | Minus |
| arm_3L | 9507554..9507931 | 17..394 | 100 | | Minus |
BS28948.pep Sequence
Translation from 16 to 543
> BS28948.pep
MARGLVIGICWTLLWSIFVAGDFQLQNVICESFDNAITNFSRCEMKFIRR
GVAAFYMVWKLYNVPIKSVDINVALYKKSNGYRPFLFNQTLDFCYYMRNP
RAHPLIYMMHKVFMQASNINHSCPYDHDLIINEFIYKKNDLKDLPIPNGD
YMIRVKVAFDKEYRTSIKIYAKRTD*
BS28948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33700-PC | 175 | CG33700-PC | 1..175 | 1..175 | 947 | 100 | Plus |
| CG33752-PA | 185 | CG33752-PA | 2..176 | 3..170 | 313 | 33.1 | Plus |
| CG33784-PA | 183 | CG33784-PA | 27..176 | 23..172 | 307 | 32 | Plus |
| CG33775-PA | 182 | CG33775-PA | 34..182 | 27..175 | 297 | 34.2 | Plus |
| CG33783-PA | 164 | CG33783-PA | 12..157 | 27..172 | 294 | 30.8 | Plus |
