BS28950.complete Sequence
1565 bp assembled on 2012-04-30
GenBank Submission: KX800544
> BS28950.complete
GAAGTTATCAGTCGACATGATCCACTGGTCTCTGATTGTCAGTGCCCTGG
GCGTCTGCGTGGCCGTCTTGGGCGGCTACTGCGGCTGGATTCTCTTCCCC
AACATGGTACACAAAAAGGTCGAGCAGAGCGTTGTTATACAAGATGGCTC
GGAACAATTCAAACGATTTGTGAATTTACCTCAGCCATTGAACTTCAAAG
TCTACATATTCAATGTGACCAATTCGGATAGGATTCAACAAGGTGCCATA
CCAATAGTCGAGGAAATAGGACCCTATGTATACAAACAATTCCGCCAGAA
GAAAGTGAAGCACTTTTCGAGAGATGGATCGAAAATTTCCTATGTGCAAA
ATGTGCATTTCGATTTCGATGCTGTTGCCTCAGCTCCATATACCCAAGAT
GATCGAATTGTGGCTCTCAATATGCACATGAATTCTGTGCTGCAGATCTC
TGAGAATGATCCTGGACTGGCTTTATTGCTAGTCCACTTGAATGCGAATC
TGAAGGCTGTCTTCAACGATCCAAGATCGATGTTTGTGAGCACTTCTGTA
AGGGAATATCTTTTCGATGGAGTACGATTCTGTATCAATCCGCAAGGAAT
CGCCAAGGCAATTTGTAACCAGATCAAGGAAAGTGGATCGAAAACAATCA
GGGAGAAGAGCGATGGCAGCTTGGCATTCTCATTCTTCGGTCATAAAAAT
GGTTCTGGTCACGAAGTATACGAGGTGCATACTGGAAAAGGTGATCCTAT
GAGGGTATTGGAGATTCAAAAACTGGATGATTCGCACAACCTGCAGGTGT
GGCTGAATGCCAGTTCAGAGGGCGAAACTTCGGTTTGTAATCAAATCAAT
GGCACTGATGCATCCGCATATCCGCCATTTCGCCAACGAGGGGATTCGAT
GTACATTTTTAGCGCAGATATTTGCAGATCGGTGCAGTTATTCTACCAAA
CCGATATACAGTACCAGGGTATACCTGGATATAGATACTCTATTGGCGAG
AACTTTATCAACGACATTGGTCCGGAACATGATAACGAGTGCTTCTGTGT
TGACAAATTGGCGAATGTGATCAAGAGGAAAAACGGATGTCTATATGCAG
GGGCCTTGGATTTGACCACCTGTTTGGATGCCCCTGTGATTTTGACATTG
CCGCACATGCTGGGCGCCTCGAATGAGTACCGCAAAATGATAAGAGGCTT
AAAACCAGATGCCAAAAAGCATCAGACTTTTGTGGATGTGCAGTCGCTGA
CTGGCACGCCTTTGCAAGGCGGCAAAAGGGTACAGTTCAATATGTTCCTC
AAGAGCATAAATCGAATCGGCATCACGGAAAATTTGCCCACAGTTTTGAT
GCCCGCCATTTGGGTGGAGGAGGGCATTCAACTCAATGGTGAAATGGTGG
CCTTTTTCAAAAAGAAACTGATCAACACATTGAAAACCCTCAACATCGTT
CACTGGGCGACCTTGTGTGGGGGCATTGGGGTTGCGGTTGCGTGCCTGAT
ATACTATATCTATCAAAGGGGGCGTGTCGTGGAGCCGCCCGTGAAGTAAA
AGCTTTCTAGACCAT
BS28950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snmp2-RB | 1533 | CG7422-PB | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| Snmp2-RD | 1671 | CG7422-PD | 556..1671 | 434..1549 | 5580 | 100 | Plus |
| Snmp2-RC | 1671 | CG7422-PC | 556..1671 | 434..1549 | 5580 | 100 | Plus |
| Snmp2-RD | 1671 | CG7422-PD | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snmp2-RB | 2343 | CG7422-RB | 608..2140 | 17..1549 | 7665 | 100 | Plus |
| Snmp2-RD | 2837 | CG7422-RD | 1519..2634 | 434..1549 | 5580 | 100 | Plus |
| Snmp2-RC | 2481 | CG7422-RC | 1163..2278 | 434..1549 | 5580 | 100 | Plus |
| Snmp2-RD | 2837 | CG7422-RD | 964..1380 | 17..433 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7736109..7736541 | 1127..695 | 2165 | 100 | Minus |
| 3L | 28110227 | 3L | 7736609..7736869 | 694..434 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 7733453..7733631 | 1549..1371 | 895 | 100 | Minus |
| 3L | 28110227 | 3L | 7738539..7738700 | 285..124 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 7738335..7738482 | 433..286 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 7733690..7733817 | 1373..1246 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 7733882..7734001 | 1246..1127 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 7741968..7742078 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 1120..1175 | 659..602 | 114 | 69 | Minus |
| 412 | 7567 | 412 412 7567bp | 1425..1477 | 366..314 | 112 | 67.9 | Minus |
BS28950.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:27 Download gff for
BS28950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7422-RB | 608..2138 | 17..1547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:24 Download gff for
BS28950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snmp2-RB | 608..2138 | 17..1547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:55 Download gff for
BS28950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snmp2-RB | 608..2138 | 17..1547 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:55 Download gff for
BS28950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7733455..7733629 | 1373..1547 | 100 | <- | Minus |
| 3L | 7733691..7733816 | 1247..1372 | 100 | <- | Minus |
| 3L | 7733882..7734000 | 1128..1246 | 100 | <- | Minus |
| 3L | 7736109..7736541 | 695..1127 | 100 | <- | Minus |
| 3L | 7736609..7736869 | 434..694 | 100 | <- | Minus |
| 3L | 7738335..7738482 | 286..433 | 100 | <- | Minus |
| 3L | 7738539..7738696 | 128..285 | 100 | <- | Minus |
| 3L | 7741968..7742078 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:24 Download gff for
BS28950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7726555..7726729 | 1373..1547 | 100 | <- | Minus |
| arm_3L | 7726791..7726916 | 1247..1372 | 100 | <- | Minus |
| arm_3L | 7726982..7727100 | 1128..1246 | 100 | <- | Minus |
| arm_3L | 7729209..7729641 | 695..1127 | 100 | <- | Minus |
| arm_3L | 7729709..7729969 | 434..694 | 100 | <- | Minus |
| arm_3L | 7731435..7731582 | 286..433 | 100 | <- | Minus |
| arm_3L | 7731639..7731796 | 128..285 | 100 | <- | Minus |
| arm_3L | 7735068..7735178 | 17..127 | 100 | | Minus |
BS28950.pep Sequence
Translation from 16 to 1548
> BS28950.pep
MIHWSLIVSALGVCVAVLGGYCGWILFPNMVHKKVEQSVVIQDGSEQFKR
FVNLPQPLNFKVYIFNVTNSDRIQQGAIPIVEEIGPYVYKQFRQKKVKHF
SRDGSKISYVQNVHFDFDAVASAPYTQDDRIVALNMHMNSVLQISENDPG
LALLLVHLNANLKAVFNDPRSMFVSTSVREYLFDGVRFCINPQGIAKAIC
NQIKESGSKTIREKSDGSLAFSFFGHKNGSGHEVYEVHTGKGDPMRVLEI
QKLDDSHNLQVWLNASSEGETSVCNQINGTDASAYPPFRQRGDSMYIFSA
DICRSVQLFYQTDIQYQGIPGYRYSIGENFINDIGPEHDNECFCVDKLAN
VIKRKNGCLYAGALDLTTCLDAPVILTLPHMLGASNEYRKMIRGLKPDAK
KHQTFVDVQSLTGTPLQGGKRVQFNMFLKSINRIGITENLPTVLMPAIWV
EEGIQLNGEMVAFFKKKLINTLKTLNIVHWATLCGGIGVAVACLIYYIYQ
RGRVVEPPVK*
BS28950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snmp2-PB | 510 | CG7422-PB | 1..510 | 1..510 | 2688 | 100 | Plus |
| Snmp2-PD | 556 | CG7422-PD | 1..556 | 1..510 | 2631 | 91.7 | Plus |
| Snmp2-PC | 556 | CG7422-PC | 1..556 | 1..510 | 2631 | 91.7 | Plus |
| Snmp1-PB | 551 | CG7000-PB | 23..481 | 23..497 | 572 | 27.3 | Plus |
| Snmp1-PA | 551 | CG7000-PA | 23..481 | 23..497 | 572 | 27.3 | Plus |
