Clone BS28951 Report

Search the DGRC for BS28951

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:289
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG6602-RA
Protein status:BS28951.pep: gold
Sequenced Size:1343

Clone Sequence Records

BS28951.complete Sequence

1343 bp assembled on 2012-04-19

GenBank Submission: KX805322

> BS28951.complete
GAAGTTATCAGTCGACATGGCATCTTCATCCGCTTGGCTAGTCCTTCTCA
TGGGCATTGGCCTTTCTGGCGCCCTGGATTTGAATTTACAAAATAGCAGT
AGCAAACTCTTGACGGTTCTCAACACATCTGCTCCGGTTCAAGAGTTGCT
ATACCACATCGATGTCTGGCGAAATGAGGCAGCTGCTGTGGCCCAGGATA
ATCCAACTTCTTCCAACCTGGAATCAGTAATTCGCTCTGAAGTTGGAGGT
GACTGGGAGCGGGGTAGGCTAGTCCTTCAATTAGCGAATCAAGCCAGAAC
TTTGGAGCTCAAGCAGGCTATTTACACAGCGTTGTGGAAGGAGCTCCAGC
AGACCAAGCAGATTTACGATCCCCTAAAGATTTTAGAATTTTATGACCAG
CTGGCTGTGCACACTGATGTTCCACTCCAACTTATGGATCATATTTACCG
GGCTTTCATCAGCCGAAGTGCCCAGTTATTGGAAGCTCCATTTCACACAG
CCAGTCGATTGGCCACTTTTCCATTGGTAAACTCTCTGGTCAATCGTCTA
ACATTCAGCACTTTGGATTATCTGAGAGACATTCTGGAAGTTCTCTACGA
TGCTGTTTTGGCCCTAGAAACACCTTTAAGTGTAGTGCAGCGCCTGGGAA
ATTTAACGGCTAGTTTGAGGCAATTGGCTCAAGCTAATCTTCAATTACTT
AGCAGGGAGGAACTCAAACGTGGAAATCCCGAAGTGCAAAAGGCCCTGCA
GAGCAACATCAGAAATTTGCTTTCGCAGCCTGGGTTTGAAAAAGAAGTTG
CAAAATCCCTCCAATCGGAAATCTATGCACACCTTCCGAAAGACGAGCAA
CTGCTGTACACCGCTCGAAAAGTATGCATCCGGAATGTGACTGAAGAAAA
TTCGTACATTTACGAATGCCCGCAGACGTACCTCATCTGCAGTAACGCTC
GAGATCCAAAGAAGGCTGCGTATTTCATCCAACGTGGTCACAGTAACGAC
AGCCGGCCGCAATTTGCTTTTTATAGTGCCTTCTGGCGTAGTCGCTACAT
CCTCATGGAACCAGCCACTGCAATTGCGAGCAATGCAACCAACTCGATTA
CCAAAAACGTTTACAGCCGACCCAACATTAACTGGTGGAGAGTGGTATAT
GGAAATGGAGGGATTGCCTTTTACGATGCTGCCACTGAAAACTCTGTTCT
GTGCGGTGGCGATCCTTTGCACTGGGATGGCGAGGAGCATCACGTCTACA
CAAGACATGCATCGGAGTTCTCAGCTCATCAGGCAGAGTGCACCTGGAGC
CTCGAAGACTGCAGCGATGCCGCTTAAAAGCTTTCTAGACCAT

BS28951.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6602-RA 1311 CG6602-PA 1..1311 17..1327 6555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6602-RA 1401 CG6602-RA 6..1316 17..1327 6555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6072144..6073454 17..1327 6555 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:34:30 has no hits.

BS28951.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:34 Download gff for BS28951.complete
Subject Subject Range Query Range Percent Splice Strand
CG6602-RA 1..1309 17..1325 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:51 Download gff for BS28951.complete
Subject Subject Range Query Range Percent Splice Strand
CG6602-RA 6..1314 17..1325 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:38 Download gff for BS28951.complete
Subject Subject Range Query Range Percent Splice Strand
CG6602-RA 6..1314 17..1325 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:38 Download gff for BS28951.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6072144..6073452 17..1325 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:51 Download gff for BS28951.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6065244..6066552 17..1325 100   Plus

BS28951.pep Sequence

Translation from 16 to 1326

> BS28951.pep
MASSSAWLVLLMGIGLSGALDLNLQNSSSKLLTVLNTSAPVQELLYHIDV
WRNEAAAVAQDNPTSSNLESVIRSEVGGDWERGRLVLQLANQARTLELKQ
AIYTALWKELQQTKQIYDPLKILEFYDQLAVHTDVPLQLMDHIYRAFISR
SAQLLEAPFHTASRLATFPLVNSLVNRLTFSTLDYLRDILEVLYDAVLAL
ETPLSVVQRLGNLTASLRQLAQANLQLLSREELKRGNPEVQKALQSNIRN
LLSQPGFEKEVAKSLQSEIYAHLPKDEQLLYTARKVCIRNVTEENSYIYE
CPQTYLICSNARDPKKAAYFIQRGHSNDSRPQFAFYSAFWRSRYILMEPA
TAIASNATNSITKNVYSRPNINWWRVVYGNGGIAFYDAATENSVLCGGDP
LHWDGEEHHVYTRHASEFSAHQAECTWSLEDCSDAA*

BS28951.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6602-PA 436 CG6602-PA 1..436 1..436 2248 100 Plus