BS28952.complete Sequence
2360 bp assembled on 2012-05-15
GenBank Submission: KX805459
> BS28952.complete
GAAGTTATCAGTCGACATGGGCAAACGGCGGACGCAATCCCTGATCGACT
CCAACTCCAGCGATAGCGACAGCGAGTCCGAGACCAATCTGGAATCGGAC
CTGATGTCGCTCGCCAAGAAGCGAAAGAAGCCCCAAACGGCGGCCAAGTC
AAGTTCCCGCTCCGACTCTGATTCCGACTGGGCCAACAACAAAGCTGGAG
CTCCCTCGTCCAAGAAGAAGAAGCGTCAGAAGCCCAGCAGAGACTCCAGC
TCCTCGGAGTCCAATTGGGATGACGACAGTCAGGATGAGAGGCAGCCAGC
GAGGCAGAGTCCTGCACAGACGCAACAGGAGCACAAGCCCCCGGAGCAGG
CCTCCCAGCCCGCCCAGCTCAGCGAGCAGGAGGAGGGCGAGGTCTCCGAT
AGCGATTCCGACAAGTCCAAGTCCAACTCCTCCTCATCCGGCTCCGACTC
CTCTAGTTCTTCCTCCAGCTCCGACTCGGAATTTGACGACGGGTTCGATG
ATGACCTCATGGGCGATGATGAGGATCGAAGGCGTCTCAATGGTTTGTCC
GAGAAGGAGCGTGAAACTGAAATTTACAAGCGCATTGAGCAGCGCGAGAT
TATGCGAACGCGCTGGGAAATCGAACGGAAACTGAAGCTGGCAAGGCGCG
GCGAGAAAAACCAAGAAAAGTCCAAGAACAAAGGAGAACGGGCCAAGAAG
AAGAAGGAAAAGCGCGAGAAGAAGGCGAGGAAAGCCAGGGAAGCCCAGGC
GCCCTTGCCAACTCAAGCTTCCACATCCACACTTTTAGATGTCGAACCCA
AGCCCAGCAACGAAGTACGGTCAGCGAGTCCGTTGTCCACGCCTGCCCTT
AACCGAGATGCGGCTTCCACTTCAGCGGCAGTGGCCAGTATTATGCCCGA
CGATGCAGCTTCCTCCGCTGGCGTCTCTGATTACTTTGATCACAAGGAAC
GTTCCAAGGAGCGCAAGAAGAACGTGGAGGCCAACAAGACGGACGACAAG
AGGAGCAATGCCATGGCCTTATTAAAAGCCAAAAGAGAGGGCAAGGCTAA
AAGAGAAGAGGAGGAAGCCAAACGCATGGCAGAAAAAGATCGTGATGACG
ACAAAGAGGAACTCGATAGCGTATCTGGTTGTAAATCGGCCGTGAAACTG
AAAGCCTCTGAAATATACTCTGACGACTCAGGCAGCAGCGATTGGGATGA
GGAAGAAAAGCCCGCGGGCAAACGTTCACGTTCCAACAGCAGCAAGGCCT
CCAGCGAATCCGAGGACGAAGAAAAGGCGCCTCAGCGGCCCGTTTTTATA
ACCACACGCGAGGATCTTAACAAATTGCGTCTATCTCGCTACAAAATGGA
GCGATTTGTGAACTTGCCAATCTTTGAGAGCACTGTACTCAACTGCTTTG
TCCGGATAAGTATCGGAAACAATGGCCAGAAACCCGTGTATCGAGTGGCC
GAAATTGTGGGAGTGGTTGAGACGGGGAAGATCTACAGTCTGGGCACTAC
ACGAACCAATCGTGGATTGAGACTTAAGCACGGAACCCAGGAGCGGGTCT
TCCGACTCGAGTTCATTTCGAACCAGGAGTTTACGGAGAACGAGTTCAAC
AAGTGGAACGAGGTCTGCCAGCAGTCGCACGTCCAGATGCCAACGATTGA
TCTAATAGCGATCAAGCAGAACGACATCAAAAAAGCATTGAACTACGAAT
TCAAGGACGAGGACGTGGACAAGATCGTGGAGGAGAAGAACCGCTTCCGG
AACCGACCCACCAATTATGCGATGAAGAAAACCTGCCTGATGAAGGAGCG
AGATGCAGCCATGTTGCGGGGTGACTACGACATTGCACAGGATCTGGGAC
AGCAAATCGACGAGCTGGAGAACCGAGCCTCTGAGCTCGACAAAAGAAGA
TCCCATACCCTCAATCTGATCTCCTACATAAACGACAGGAACAGGAAGAA
GAATGTGGAGGACGCTGAGAAGGCAATTTTAGAGGAGGCTCGGGCCAACA
AAGGCCTCAAGATCTCGGATCCCTTCACACGTCGCATTACTCAGCCGCGC
ATGGGCTTCAAGGGTGCCAAGAAGGACGAAGATGACATGCAACTGGCACC
ACTGCCGCCGCCACCCCCAGGAAAAAAGAGGCCCAACGAAGCAGGAACTT
CGAGTGCAAGCGTCAGGTCCACGGACTCCAAGGACTACAGTCTCTACTCA
CTGCATGACTTTGACATTGACCTAGATGTTCCGCTACCAGTCAATACGAA
TTCAGTGCCCAAGCCGGCTAGCAAACCAGCTGAAACAGTCTCCAAACGTT
CGCTGAATCTAGAGGATTACAAAAAAAAGCGCGGTCTTATCTAGAAGCTT
TCTAGACCAT
BS28952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtf1-RB | 2328 | CG10955-PB | 1..2328 | 17..2344 | 11640 | 100 | Plus |
| Rtf1-RA | 2328 | CG10955-PA | 1..2328 | 17..2344 | 11640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtf1-RB | 3161 | CG10955-RB | 103..2432 | 17..2346 | 11650 | 100 | Plus |
| Rtf1-RA | 2533 | CG10955-RA | 103..2432 | 17..2346 | 11650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22376406..22377592 | 1054..2240 | 5935 | 100 | Plus |
| 2R | 25286936 | 2R | 22375383..22376341 | 97..1055 | 4795 | 100 | Plus |
| 2R | 25286936 | 2R | 22377648..22377755 | 2239..2346 | 540 | 100 | Plus |
| 2R | 25286936 | 2R | 22375192..22375273 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:19:25 has no hits.
BS28952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:32 Download gff for
BS28952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtf1-RA | 101..2428 | 17..2344 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:46 Download gff for
BS28952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtf1-RA | 103..2430 | 17..2344 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:40:27 Download gff for
BS28952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtf1-RA | 103..2430 | 17..2344 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:40:27 Download gff for
BS28952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22375192..22375272 | 17..97 | 100 | -> | Plus |
| 2R | 22375384..22376341 | 98..1055 | 100 | -> | Plus |
| 2R | 22376408..22377592 | 1056..2240 | 100 | -> | Plus |
| 2R | 22377650..22377753 | 2241..2344 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:46 Download gff for
BS28952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18262697..18262777 | 17..97 | 100 | -> | Plus |
| arm_2R | 18262889..18263846 | 98..1055 | 100 | -> | Plus |
| arm_2R | 18263913..18265097 | 1056..2240 | 100 | -> | Plus |
| arm_2R | 18265155..18265258 | 2241..2344 | 100 | | Plus |
BS28952.pep Sequence
Translation from 16 to 2343
> BS28952.pep
MGKRRTQSLIDSNSSDSDSESETNLESDLMSLAKKRKKPQTAAKSSSRSD
SDSDWANNKAGAPSSKKKKRQKPSRDSSSSESNWDDDSQDERQPARQSPA
QTQQEHKPPEQASQPAQLSEQEEGEVSDSDSDKSKSNSSSSGSDSSSSSS
SSDSEFDDGFDDDLMGDDEDRRRLNGLSEKERETEIYKRIEQREIMRTRW
EIERKLKLARRGEKNQEKSKNKGERAKKKKEKREKKARKAREAQAPLPTQ
ASTSTLLDVEPKPSNEVRSASPLSTPALNRDAASTSAAVASIMPDDAASS
AGVSDYFDHKERSKERKKNVEANKTDDKRSNAMALLKAKREGKAKREEEE
AKRMAEKDRDDDKEELDSVSGCKSAVKLKASEIYSDDSGSSDWDEEEKPA
GKRSRSNSSKASSESEDEEKAPQRPVFITTREDLNKLRLSRYKMERFVNL
PIFESTVLNCFVRISIGNNGQKPVYRVAEIVGVVETGKIYSLGTTRTNRG
LRLKHGTQERVFRLEFISNQEFTENEFNKWNEVCQQSHVQMPTIDLIAIK
QNDIKKALNYEFKDEDVDKIVEEKNRFRNRPTNYAMKKTCLMKERDAAML
RGDYDIAQDLGQQIDELENRASELDKRRSHTLNLISYINDRNRKKNVEDA
EKAILEEARANKGLKISDPFTRRITQPRMGFKGAKKDEDDMQLAPLPPPP
PGKKRPNEAGTSSASVRSTDSKDYSLYSLHDFDIDLDVPLPVNTNSVPKP
ASKPAETVSKRSLNLEDYKKKRGLI*
BS28952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtf1-PB | 775 | CG10955-PB | 1..775 | 1..775 | 3931 | 100 | Plus |
| Rtf1-PA | 775 | CG10955-PA | 1..775 | 1..775 | 3931 | 100 | Plus |
| CG31702-PA | 441 | CG31702-PA | 3..415 | 311..737 | 305 | 25.6 | Plus |
| CG31703-PA | 439 | CG31703-PA | 3..413 | 311..737 | 300 | 25.1 | Plus |
| CG12498-PA | 261 | CG12498-PA | 42..186 | 419..563 | 237 | 33.1 | Plus |
