BS28958.complete Sequence
1052 bp assembled on 2012-04-19
GenBank Submission: KX806339
> BS28958.complete
GAAGTTATCAGTCGACATGCAGACACAGACACACACCACCACAGACCGAC
ATGGCTATAGCCTGCGCTTTTCGCCTTTCGAGGCTAACTACTTGCTGCTA
GCTACAAGCCAACTGTACGGTCTTGCTGGAGGTGGTTCCCTCTTTCTGCT
GGAACAGAACTCCAACACAAATTCCTCATCCACAGATGGCCAGAGTCTCG
GAGAGCTGTGCCGCCTAGAGTGGTCCGATGGATTGTTCGACGTCGCCTGG
TGTCCGTATGCCGCCGATATCGCCGCCACTGCCTCCGGAGATGGATCGCT
TCAGATCTGGTGCGGATTGGATGGCGAATCGGCGAGCAACCAGCTGACGC
CGAAACAGCCGCTGATCTGCCTGCAGGAGCACAAGAACGAGGTGTACAGC
CTGGACTGGGGCGAGAAGTGGAACTACCACACGCTGCTCTCGGGCAGCTG
GGATTGTACACTGAAATTGTGGGACTGCAACAGACAGAACTCCATCACCA
CATTTGTGGGCCACAACGATCTGATCTACGGGGCCAAGTTCTCGCCCCTG
ATCGCCAATCTGTTTGCAAGCGTAAGTACCGATGGACATCTTAACTTATG
GAACTCTCTTGACTTTGCAGGTAAACCCCTGATGAGCATCGAGGCGCATG
CGAGTGAGGCACTATGCTGCGACTGGTCGCACTTCGATCGCAATGTCCTG
GTCACTGGAGGTTCGGACGGTCTGATCCGCGGCTGGGATCTGCGCAAGAT
GAGGACGCACGTCTTTGAGCTGTACTCTGGAGAATTCGCTGTCCGGCGAT
TGGCCTGTTCACCGCACTCGGCAGCGGTCTTGGCATCGGCCAATTATGAT
TTTACCACAAGGATTTGGAATCTGGAGCGTGGTGAGTCCGCCCAGGAGGT
CAATGCGCGGCACACGGAGTTCGTGTGCGGATTGGATTGGAATCCCCACA
GGACCCATCAGTTGGCCGACTGTGGCTGGGACTCGTTGGCCAACGTTTAT
ACCCCGCAGTGTCTGAGCGGTGATCTGGTCGTCTAGAAGCTTTCTAGACC
AT
BS28958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex7-RB | 1020 | CG6486-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
| Pex7-RA | 1020 | CG6486-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex7-RB | 1391 | CG6486-RB | 77..1096 | 17..1036 | 5100 | 100 | Plus |
| Pex7-RA | 1443 | CG6486-RA | 129..1148 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8649705..8650460 | 107..862 | 3780 | 100 | Plus |
| 3L | 28110227 | 3L | 8650540..8650716 | 860..1036 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 8649547..8649638 | 17..108 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:34:15 has no hits.
BS28958.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:33 Download gff for
BS28958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6486-RB | 77..1096 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:48 Download gff for
BS28958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex7-RA | 129..1148 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:34 Download gff for
BS28958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex7-RA | 129..1148 | 17..1036 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:34 Download gff for
BS28958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8649547..8649638 | 17..108 | 100 | -> | Plus |
| 3L | 8649707..8650459 | 109..861 | 100 | -> | Plus |
| 3L | 8650542..8650716 | 862..1036 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:48 Download gff for
BS28958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8642647..8642738 | 17..108 | 100 | -> | Plus |
| arm_3L | 8642807..8643559 | 109..861 | 100 | -> | Plus |
| arm_3L | 8643642..8643816 | 862..1036 | 100 | | Plus |
BS28958.pep Sequence
Translation from 16 to 1035
> BS28958.pep
MQTQTHTTTDRHGYSLRFSPFEANYLLLATSQLYGLAGGGSLFLLEQNSN
TNSSSTDGQSLGELCRLEWSDGLFDVAWCPYAADIAATASGDGSLQIWCG
LDGESASNQLTPKQPLICLQEHKNEVYSLDWGEKWNYHTLLSGSWDCTLK
LWDCNRQNSITTFVGHNDLIYGAKFSPLIANLFASVSTDGHLNLWNSLDF
AGKPLMSIEAHASEALCCDWSHFDRNVLVTGGSDGLIRGWDLRKMRTHVF
ELYSGEFAVRRLACSPHSAAVLASANYDFTTRIWNLERGESAQEVNARHT
EFVCGLDWNPHRTHQLADCGWDSLANVYTPQCLSGDLVV*
BS28958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex7-PB | 339 | CG6486-PB | 1..339 | 1..339 | 1853 | 100 | Plus |
| Pex7-PA | 339 | CG6486-PA | 1..339 | 1..339 | 1853 | 100 | Plus |
| Caf1-PB | 429 | CG4236-PB | 78..405 | 22..328 | 255 | 25.6 | Plus |
| Caf1-PA | 430 | CG4236-PA | 79..406 | 22..328 | 255 | 25.6 | Plus |
| CG7609-PB | 776 | CG7609-PB | 35..309 | 36..323 | 236 | 26.7 | Plus |
