BS28959.complete Sequence
1312 bp assembled on 2012-05-10
GenBank Submission: KX804954
> BS28959.complete
GAAGTTATCAGTCGACATGCAGCAGTCGGGTCAAAAAGGCACCAGAAACA
CGCTTCAGCACGCCATCGGCCCAGTTCTGGTTATAGCCCAGTTCTTCGGA
GTCCTGCCTGTTGCAGGAGTCTGGCCGAGTTGTCGTCCGGAGAGGGTGCG
CTTTCGCTGGATATCCTTGTCCCTGCTGGCTGCTCTGATCCTGTTCGTCT
TCTCCATCGTGGACTGTGCGCTATCCTCGAAAGTGGTGTTCGATCATGGA
CTGAAAATCTATACCATAGGATCTCTTAGTTTCAGCGTGATCTGCATCTT
TTGTTTTGGGGTCTTCCTGCTGCTTTCCCGCCGCTGGCCATACATCATCC
GTCGAACGGCGGAGTGCGAGCAGATATTCCTGGAACCAGAGTACGATTGC
AGCTATGGACGTGGCTACTCCAGTCGCCTTCGCCTCTGGGGAGTCTGCAT
GCTGGTGGCCGCTCTCTGCGAGCACTCCACCTATGTGGGCAGCGCGCTGT
ACAACAATCACCTGGCCATCGTGGAGTGCAAGCTGGATGCGAACTTTTGG
CAGAACTATTTTCAGCGAGAGCGCCAGCAGCTCTTCCTGATCATGCACTT
CACCGCCTGGTGGATACCCTTCATCGAGTGGACCACGCTGTCGATGACCT
TCGTGTGGAACTTTGTGGACATCTTTCTGATACTCATCTGCCGCGGAATG
CAGATGCGATTCCAGCAGATGCACTGGCGCATCAGGCAGCATGTGAGGCA
GCAAATGCCGAATGAATTCTGGCAGAGGATTCGCTGTGATCTTCTGGACC
TCAGTGATCTTCTGGGTATCTACGACAAGGAATTATCCGGTTTGATCGTG
CTATCCTGTGCCCACAATATGTACTTCGTTTGTGTGCAGATTTATCATAG
CTTTCAATCCAAGGGCAACTATGCGGATGAGTTATATTTCTGGTTTTGCT
TGTCTTATGTCATCATTCGCGTACTAAACATGATGTTCGCTGCATCCTCG
ATTCCGCAAGAGGCTAAGGAGATTTCCTACACCCTATACGAAATACCCAC
TGAGTTTTGGTGCGTGGAGCTCAGGCGCCTGAATGAGATCTTTCTATCCG
ACCACTTTGCTCTGAGTGGCAAGGGATACTTTCTGCTGACTAGACGATTA
ATATTTGCAATGGCTGCCACTTTGATGGTCTACGAACTGGTGCTCATCAA
CCAAATGGCTGGATCTGAGGTGCAAAAGAGCTTCTGCGAGGGCGGCGTTG
GCTCGTCCAAGAGCATATTTTCCTAGAAGCTTTCTAGACCATTCGTTTGG
CGCGCGAAAGGG
BS28959.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr64c-RB | 1260 | CG32256-PB | 1..1260 | 17..1276 | 6300 | 100 | Plus |
| Gr64c-RA | 1260 | CG32256-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
| Gr64d-RC | 1254 | CG14987-PC | 594..1016 | 619..1041 | 330 | 71.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr64b-RA | 2858 | CG32257-RA | 1491..2751 | 16..1276 | 6305 | 100 | Plus |
| Gr64c-RB | 2858 | CG32256-RB | 1491..2751 | 16..1276 | 6305 | 100 | Plus |
| Gr64c-RA | 1542 | CG32256-RA | 175..1435 | 16..1276 | 6305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4030798..4031436 | 268..906 | 3195 | 100 | Plus |
| 3L | 28110227 | 3L | 4031495..4031747 | 907..1159 | 1265 | 100 | Plus |
| 3L | 28110227 | 3L | 4030543..4030741 | 72..270 | 995 | 100 | Plus |
| 3L | 28110227 | 3L | 4031809..4031925 | 1160..1276 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 4030438..4030496 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:56:02 has no hits.
BS28959.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-10 10:04:43 Download gff for
BS28959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr64c-RA | 176..1439 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:29 Download gff for
BS28959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr64c-RA | 176..1439 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:12 Download gff for
BS28959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr64c-RA | 176..1439 | 17..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:12 Download gff for
BS28959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4030439..4030496 | 17..74 | 100 | -> | Plus |
| 3L | 4030546..4030740 | 75..269 | 100 | -> | Plus |
| 3L | 4030800..4031436 | 270..906 | 100 | -> | Plus |
| 3L | 4031495..4031747 | 907..1159 | 100 | -> | Plus |
| 3L | 4031809..4031929 | 1160..1281 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:29 Download gff for
BS28959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4030439..4030496 | 17..74 | 100 | -> | Plus |
| arm_3L | 4030546..4030740 | 75..269 | 100 | -> | Plus |
| arm_3L | 4030800..4031436 | 270..906 | 100 | -> | Plus |
| arm_3L | 4031495..4031747 | 907..1159 | 100 | -> | Plus |
| arm_3L | 4031809..4031929 | 1160..1281 | 97 | | Plus |
BS28959.pep Sequence
Translation from 16 to 1275
> BS28959.pep
MQQSGQKGTRNTLQHAIGPVLVIAQFFGVLPVAGVWPSCRPERVRFRWIS
LSLLAALILFVFSIVDCALSSKVVFDHGLKIYTIGSLSFSVICIFCFGVF
LLLSRRWPYIIRRTAECEQIFLEPEYDCSYGRGYSSRLRLWGVCMLVAAL
CEHSTYVGSALYNNHLAIVECKLDANFWQNYFQRERQQLFLIMHFTAWWI
PFIEWTTLSMTFVWNFVDIFLILICRGMQMRFQQMHWRIRQHVRQQMPNE
FWQRIRCDLLDLSDLLGIYDKELSGLIVLSCAHNMYFVCVQIYHSFQSKG
NYADELYFWFCLSYVIIRVLNMMFAASSIPQEAKEISYTLYEIPTEFWCV
ELRRLNEIFLSDHFALSGKGYFLLTRRLIFAMAATLMVYELVLINQMAGS
EVQKSFCEGGVGSSKSIFS*
BS28959.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr64c-PB | 419 | CG32256-PB | 1..419 | 1..419 | 2233 | 100 | Plus |
| Gr64c-PA | 419 | CG32256-PA | 1..419 | 1..419 | 2233 | 100 | Plus |
| Gr64d-PC | 417 | CG14987-PC | 1..415 | 1..418 | 1349 | 60.8 | Plus |
| Gr64d-PA | 353 | CG14987-PA | 2..351 | 69..418 | 1195 | 63.1 | Plus |
| Gr64b-PA | 406 | CG32257-PA | 6..400 | 12..405 | 563 | 31.8 | Plus |
