BS28960.complete Sequence
1568 bp assembled on 2012-05-22
GenBank Submission: KX805767
> BS28960.complete
GAAGTTATCAGTCGACATGTGCGCAATCGAAGATCGAAAGGTCCTCAAGA
TGGGGCTCACTCTTGTGTGCCTGACTTTACTGGCCATTCACATGGCAGAT
GCGGTTGTGCAGCACAGATCCTTGGAGGATGCTCGACAGGAGCGCCAGCG
ATTGGTGCACAGGTACACAAAGGTCCTGAACAAGGAGGAGGGAGCCATAA
GACTGGTGGGCGGAGATAATGAGTACGAAGGCAACATTGAGGTCCTGCAC
AATGGCAAGTGGGGAGCAGTTTGCGATGACGAGTGGGATTCCACCGAAGC
AGACATTGTGTGCCGACAACTGGGTTTTCCCGGCATGCGGAGGTATACGA
GAAGTGGCTTCTTTGGACCCGCTCGTCGTCGCTTCTGGATGGACAACCTC
TTTTGCGAGGGTCACGAGCAGGAACTAGTGGATTGCCATTTCGAGGGCTG
GGGCGAGAACGATTGTGAACCAGGAGAGGCGGCTGGCGTGGTCTGTTACC
CGCCGGAAAATGCACTGATCCCCATGGCAACACCCATCATCCGCGACGAG
GATTTGCCCAAGTACCCGATTCATTCGCGATCACGTTTATACGTGAGACT
GCGAGGCGGAAGATCGCGGATCGAGGGACGAGTGGAGGTCAGTTTGGATG
GCGGTCGATGGGGCAGTGTGTGCGCCGATGGCTGGTCACTTTTGGAGGCC
AATGTCGTGTGCCGACAGCTCGGCCTGGGCTATGCCAGCGAGGCCTTCCA
AACCGATTTCTTTGGTGGCTTCAATGTGTCAAGACCCGTGCTGAGTGGCA
GCGAATGCTATGGCAACGAAACGGAACTGGCTGACTGCCTGCATCATGAT
GCAAGTCAGGGTATCATCAGCTGTCATGGCAATCGGCAGCACGTGGCCGC
TGTGATCTGTGACTATATCGCCCCCGATCTGGTGGTGGATTATCTGGAAA
TCGAACAGACGGCCCATCTGGAGGATAGACCCATGCTGCTGATGCAGTGC
GCCATGGAGGAAAACTGTGTGGCCAACGAGGCGTATCAAATCCAACGGGA
TGATCCCCACTGGCGTTATCGATCTAGGCGATTGCTCAAGTTTACGGCAG
CTGCCATCAATGCGGGCAATGCGGATTTCCGGCCATTCAAGGAGAAGAGC
CAATGGGAGTGGCACATGTGCCATATGCACTTTCACAGCATGGAGGTGTT
TGCCACCTTTGATATCTTCAATTTAAGAGGAATCAAAGTGGCTCAGGGAC
ACAAGGCATCTTTCTGTTTGGAGGACAGTAACTGCCTGCCGGGTGTTGCC
AAGAAGTACAATTGCGCCAACTATGGAGATCAGGGCATTTCCATTAACTG
CTCGGATGTGTACCTGTACAATTTGGATTGCCAATGGGTGGATGTGACAG
ACCTGATTCCCGGCACCTATGTCCTCAAAATAGCCATTAATCCGGAGTTT
AAGGTGGCCGAGATGAACTATGATAACAACGCTGCCATCTGCGATCTGAT
ATACACTGCAAATTTTGCCAGAGTGCAAAACTGCCAGCTGGGGAGACCTT
GAAAGCTTTCTAGACCAT
BS28960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox2-RA | 1536 | CG4402-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox2-RA | 1729 | CG4402-RA | 30..1566 | 17..1553 | 7685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21790291..21791239 | 1177..229 | 4745 | 100 | Minus |
| 2R | 25286936 | 2R | 21789786..21790005 | 1553..1334 | 1100 | 100 | Minus |
| 2R | 25286936 | 2R | 21791337..21791551 | 231..17 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 21790059..21790217 | 1335..1177 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:22:02 has no hits.
BS28960.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-22 13:51:26 Download gff for
BS28960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox2-RA | 105..1639 | 17..1551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:57 Download gff for
BS28960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox2-RA | 30..1564 | 17..1551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:25 Download gff for
BS28960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox2-RA | 30..1564 | 17..1551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:25 Download gff for
BS28960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21789788..21790004 | 1335..1551 | 100 | <- | Minus |
| 2R | 21790060..21790217 | 1177..1334 | 100 | <- | Minus |
| 2R | 21790292..21791237 | 231..1176 | 100 | <- | Minus |
| 2R | 21791338..21791551 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:57 Download gff for
BS28960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17677293..17677509 | 1335..1551 | 100 | <- | Minus |
| arm_2R | 17677565..17677722 | 1177..1334 | 100 | <- | Minus |
| arm_2R | 17677797..17678742 | 231..1176 | 100 | <- | Minus |
| arm_2R | 17678843..17679056 | 17..230 | 100 | | Minus |
BS28960.pep Sequence
Translation from 16 to 1551
> BS28960.pep
MCAIEDRKVLKMGLTLVCLTLLAIHMADAVVQHRSLEDARQERQRLVHRY
TKVLNKEEGAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCR
QLGFPGMRRYTRSGFFGPARRRFWMDNLFCEGHEQELVDCHFEGWGENDC
EPGEAAGVVCYPPENALIPMATPIIRDEDLPKYPIHSRSRLYVRLRGGRS
RIEGRVEVSLDGGRWGSVCADGWSLLEANVVCRQLGLGYASEAFQTDFFG
GFNVSRPVLSGSECYGNETELADCLHHDASQGIISCHGNRQHVAAVICDY
IAPDLVVDYLEIEQTAHLEDRPMLLMQCAMEENCVANEAYQIQRDDPHWR
YRSRRLLKFTAAAINAGNADFRPFKEKSQWEWHMCHMHFHSMEVFATFDI
FNLRGIKVAQGHKASFCLEDSNCLPGVAKKYNCANYGDQGISINCSDVYL
YNLDCQWVDVTDLIPGTYVLKIAINPEFKVAEMNYDNNAAICDLIYTANF
ARVQNCQLGRP*
BS28960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox2-PA | 511 | CG4402-PA | 1..511 | 1..511 | 2792 | 100 | Plus |
| lox-PA | 360 | CG11335-PA | 50..352 | 203..507 | 745 | 48.2 | Plus |
| Tequila-PD | 1450 | CG4821-PD | 887..1119 | 61..276 | 341 | 36.6 | Plus |
| Tequila-PF | 2379 | CG4821-PF | 1816..2048 | 61..276 | 341 | 36.6 | Plus |
| Tequila-PG | 2792 | CG4821-PG | 2229..2461 | 61..276 | 341 | 36.6 | Plus |
| Tequila-PD | 1450 | CG4821-PD | 1040..1137 | 62..160 | 206 | 36.4 | Plus |
| Tequila-PF | 2379 | CG4821-PF | 1969..2066 | 62..160 | 206 | 36.4 | Plus |
