BS28965.complete Sequence
2537 bp assembled on 2012-04-30
GenBank Submission: KX802872
> BS28965.complete
GAAGTTATCAGTCGACATGACGACCCACCAGTTGCTAAACAAGAATGTTC
GCACCATGCCCTCCTGGGTGATGGAGGCAAATGACCGCATTGGGCCCAAA
CCGCCACCCACGCCACCAAACGGTGTGGCTGGTGGTCTTCCCAAGGCGCC
TGCTCTGCCGCCCAAGGCGAAGAGCACTCCCGAGCCGGACTACGAGATCA
TCGAATTCTCCAGCCAGCAGTACTCCAACGAACCGATGAAGACCACAGTG
ATCAGAACCAAGACACCAGATAACAAACTAAAGTGCACCTTGTGCGGTTC
CCAGAATCCCTGGGTAACCTGTGCCGAGTGCGCCGGCCAAATCTTTTGCG
CCTCCTGCGACGACATGTTCCACAAGCATCCCAAACGTAAGCAGCACATG
AGAAAGGCTGTGGAGCAGGGCACACCGCCGATTCCGCCAAAGGCACAGGC
CGGTGGTGGGGCACCACCACCAGTGGCACCTCCACGACGCAGCAAACGAG
GCCTTTTGACACCGTTTCTGGGCCGCAAGGATCAGATGCTGCCGCCGCCC
TCGCCCACGCCCTCGCACAAGTCGCTGGGCGGCTGGCGGGGATCGCTCGG
TGGCGGGGCCACGCCCCCAGTGCCACCAATTGCCACCAGCTCTGCCAACC
AGATGAACAACCGACCACTGCCCGATCCACCGCGCAGCGAGGGCGGGGGA
TCTTCCAGATCGGGCACCCCCAAGTCCGTGTTCGACACCATCCAGCGACC
GCCGTCGGTGCAGCTGGAGAAGATCAAGAGCAAGGCCAGCGCCACGCTGG
ACCGCATGGCCATTCTGCAGCAGCGGTACCGCCAACAGAAGGCTCGCCAG
GATCTGAGCGCCAACAGCGAACAGGCGGCCGGCGCCCAGCGGCGACAGAT
GAGCACATCGGTGTTCAATCTCAACTCGAATCCACGTCGACCACTGTCCG
AGGCCCAAAACGGAGGTGCCTGGCTCGCCAATCAGCGCATCCAGCAGGCC
CAATCCCTGGCGCAGCTAAACTGCGCTGGATGTCAACAGAGTCAGCAGCA
TCCTGGCTGGGCACAGCATCCGCACCAAGCACTTCCTCAGCACCAGCATC
CCGATCAGTGGTCACAGTTCGGCTCCCAACAGCAATTCAACAACTCCAAT
CTGTCCCTGAACGTTGGACCGGGTTACATGTCGCAGCAACATCATCCACA
CTATCCGCCACCAGTGTTTATGACCCAGCGTGGTATGATGCCCAATGTGT
ATCCAGGAGCACCAGGCTATCCCATGATGCATCCAGGTGTCATGGGAATG
CCACCTTCAGCTGCCTCCAGAGCTGCATCCCGTTCCCGGTACGCTGCATC
ACCAACACCCAGCCGCAAATCGATGTCCTTGCGTCGCAAGCGCAATAGCT
ACGTGGATGACGAACTTACGGATGACGAGGACTCCGACCAGGATGACCGC
AGATCTTTGGTGTCCAATCGCTCGGGCATGACTAGTGCCTCGCGCTCCCA
GCATCACCAAAACCATATCCAGCCCCGCCAAAGGCGCCTGTCCAGTGCCT
CCCAACTCATAGCCAGCGATGAATTGGACGGCGATCAGGTGCATCACAAG
ATGCGGAATCGTCGGGGATCCATTGCCAAGTCCGTGCAGAGTGAGTGGCT
ACCGGAGCGACGGGAAAATGAGGGAACCCTTACCAGAAACAAAACAGCAA
CGGACTCGGCCAGAACCAGTCGCATTTACTCCGATCTGGAGTCTGAGGGA
TCGGGTGCTCGGGCCTTGGTTCAAGCTAAAATTCAGCAGAAGCTCCAAGA
AGCCGATCAGCACAAATCCTCGAAGAAGGCTGAGCCAAAACGCAAGCCGG
AGATGAAGGACGAGAATACACAGGCGGCAGCGGTGGTGCAAAAGGTGGTG
GTGCCACCAGCCCATGAAGAGAGTGCCTCGGAATACGAGGAAGTGGTCGA
AGAGGTAACCGCCTCAGAGAGTGAGGCTGAGGCTCAAACAGCACCCGATC
CCCAGGAAGTTCCTGACGAGATTGGGGCTGATGATCTCGGCCCACCACCT
TCTACCCCAGACCACGAATGGGAATGCGAGTTCTGCACGTTTGTGAACGA
GCCCAACATCAAGATCTGCTCCATATGCTGCAAGACGCCCAGCAAACCTC
CAGTGCAGCCCAACAAGGCCAAAAAGGTAGAGGAAAAACCACAGCCTCCA
GCTGAAAAGTCTAACAATATCAAGGCGTCTTCCAAGACGGAAACTAAGCC
AGTGCAAAAGCCTACTACAAAGAGCCAACAACCCAGTCAGAAATCCGTTG
CTGCTCTTTCGAAGACTACTCACACCAACTCCACGTCTAGCTCAAAAGCG
TCGCCAGCTGTAAACTCCAAGACCACCTCCAGTATTCCTATCAAGACACC
ATCGAAATCCACACTGAAAACTTCGTCGGAAAATGAATCCGATAACTCGC
TGGCCAAGAGTCTTCTGCACAAAGGTAGGATACAAAAGAGAATCTCATTT
TTCGAAGGCACAAAGACCTAAAAGCTTTCTAGACCAT
BS28965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11321-RF | 2505 | CG11321-PF | 1..2505 | 17..2521 | 12525 | 100 | Plus |
| CG11321-RC | 2505 | CG11321-PC | 1..2505 | 17..2521 | 12525 | 100 | Plus |
| CG11321-RJ | 8397 | CG11321-PJ | 1..2458 | 17..2474 | 12290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11321-RF | 2882 | CG11321-RF | 263..2767 | 17..2521 | 12525 | 100 | Plus |
| CG11321-RC | 2768 | CG11321-RC | 149..2653 | 17..2521 | 12525 | 100 | Plus |
| CG11321-RJ | 8906 | CG11321-RJ | 149..2606 | 17..2474 | 12290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6767211..6768448 | 2521..1284 | 6190 | 100 | Minus |
| 2L | 23513712 | 2L | 6769397..6769739 | 875..533 | 1715 | 100 | Minus |
| 2L | 23513712 | 2L | 6768502..6768796 | 1288..994 | 1475 | 100 | Minus |
| 2L | 23513712 | 2L | 6770335..6770534 | 269..70 | 1000 | 100 | Minus |
| 2L | 23513712 | 2L | 6770133..6770273 | 407..267 | 705 | 100 | Minus |
| 2L | 23513712 | 2L | 6769953..6770083 | 535..405 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 6768845..6768972 | 998..871 | 640 | 100 | Minus |
| 2L | 23513712 | 2L | 6770591..6770644 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:49:25 has no hits.
BS28965.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:28 Download gff for
BS28965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11321-RC | 130..2632 | 17..2519 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:33 Download gff for
BS28965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11321-RC | 130..2632 | 17..2519 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:38 Download gff for
BS28965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11321-RC | 149..2651 | 17..2519 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:38 Download gff for
BS28965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6770591..6770644 | 17..70 | 100 | | Minus |
| 2L | 6767213..6768445 | 1287..2519 | 100 | <- | Minus |
| 2L | 6768504..6768792 | 998..1286 | 100 | <- | Minus |
| 2L | 6768846..6768968 | 875..997 | 100 | <- | Minus |
| 2L | 6769398..6769736 | 536..874 | 100 | <- | Minus |
| 2L | 6769953..6770081 | 407..535 | 100 | <- | Minus |
| 2L | 6770134..6770270 | 270..406 | 100 | <- | Minus |
| 2L | 6770335..6770533 | 71..269 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:33 Download gff for
BS28965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6767213..6768445 | 1287..2519 | 100 | <- | Minus |
| arm_2L | 6768504..6768792 | 998..1286 | 100 | <- | Minus |
| arm_2L | 6768846..6768968 | 875..997 | 100 | <- | Minus |
| arm_2L | 6769398..6769736 | 536..874 | 100 | <- | Minus |
| arm_2L | 6769953..6770081 | 407..535 | 100 | <- | Minus |
| arm_2L | 6770134..6770270 | 270..406 | 100 | <- | Minus |
| arm_2L | 6770335..6770533 | 71..269 | 100 | <- | Minus |
| arm_2L | 6770591..6770644 | 17..70 | 100 | | Minus |
BS28965.pep Sequence
Translation from 16 to 2520
> BS28965.pep
MTTHQLLNKNVRTMPSWVMEANDRIGPKPPPTPPNGVAGGLPKAPALPPK
AKSTPEPDYEIIEFSSQQYSNEPMKTTVIRTKTPDNKLKCTLCGSQNPWV
TCAECAGQIFCASCDDMFHKHPKRKQHMRKAVEQGTPPIPPKAQAGGGAP
PPVAPPRRSKRGLLTPFLGRKDQMLPPPSPTPSHKSLGGWRGSLGGGATP
PVPPIATSSANQMNNRPLPDPPRSEGGGSSRSGTPKSVFDTIQRPPSVQL
EKIKSKASATLDRMAILQQRYRQQKARQDLSANSEQAAGAQRRQMSTSVF
NLNSNPRRPLSEAQNGGAWLANQRIQQAQSLAQLNCAGCQQSQQHPGWAQ
HPHQALPQHQHPDQWSQFGSQQQFNNSNLSLNVGPGYMSQQHHPHYPPPV
FMTQRGMMPNVYPGAPGYPMMHPGVMGMPPSAASRAASRSRYAASPTPSR
KSMSLRRKRNSYVDDELTDDEDSDQDDRRSLVSNRSGMTSASRSQHHQNH
IQPRQRRLSSASQLIASDELDGDQVHHKMRNRRGSIAKSVQSEWLPERRE
NEGTLTRNKTATDSARTSRIYSDLESEGSGARALVQAKIQQKLQEADQHK
SSKKAEPKRKPEMKDENTQAAAVVQKVVVPPAHEESASEYEEVVEEVTAS
ESEAEAQTAPDPQEVPDEIGADDLGPPPSTPDHEWECEFCTFVNEPNIKI
CSICCKTPSKPPVQPNKAKKVEEKPQPPAEKSNNIKASSKTETKPVQKPT
TKSQQPSQKSVAALSKTTHTNSTSSSKASPAVNSKTTSSIPIKTPSKSTL
KTSSENESDNSLAKSLLHKGRIQKRISFFEGTKT*
BS28965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11321-PF | 834 | CG11321-PF | 1..834 | 1..834 | 4407 | 100 | Plus |
| CG11321-PC | 834 | CG11321-PC | 1..834 | 1..834 | 4407 | 100 | Plus |
| CG11321-PH | 887 | CG11321-PH | 1..887 | 1..834 | 4343 | 94 | Plus |
| CG11321-PJ | 2798 | CG11321-PJ | 1..823 | 1..823 | 4333 | 99.5 | Plus |
| CG11321-PI | 2839 | CG11321-PI | 1..823 | 1..823 | 4333 | 99.5 | Plus |
