BS28971.complete Sequence
1835 bp assembled on 2012-10-18
GenBank Submission: KX801926
> BS28971.complete
GAAGTTATCAGTCGACATGCGATTCACCTACAATCAGTATAAACATTATG
AGTCCGGTTATCGGATTCCATCTAAAATGCATAATCTGAGCCATAATAAC
AACAATAATAGTAATAATAATAATAATGGGGGTGGCCACACCAACAACAA
CAACAATGGCAACAATAGTGGCCATCACTATGCCCATCACAATAATAGCA
ACAATGGCGGCAATAACAACACAAATTTCCAAGCCTATCAGCATCATTAC
AAAAGTAATTTCGGCATGAGAATGACCATGTCCACCAATTCCACAATGAG
TGCGCGTATACATCGAAAAGGATTTCGCATACCATCGAAAAGACAGCCGG
GTAAGGGATTGCCCGGCAAGTTGCACACCATAACCAGGACGGGTCCTGGC
AAAATGGTTCCTGGGAAGCGAATACCACAGCGACCCCATCCGCCGCCCTG
CGACAACTCGAACGACAGTGGGCTGGGTTTCGATCAGCACACGGAGCTGA
GATCCTCGGCAGGAGCTGGGGGCGTTACTGATCCGGCGGCCAATGGAGGC
AGTGGCTCCAACTCTGGCCAGCGATCCAGTTTGCTGGTCAATAGCGCTTT
AACCAACACAGTGGCTGCTGCAGCAGCCGCAGCAGCTGCCGCGGTGGCCA
GCAACACGTTGCAGCAGCATCAGCAGCACCATCAACAGCAGCAGCAGCAA
CAGCAGCAACAACAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCA
GCAACAACATTCACCGCAGCAGCATTTAATCAGAGCGATACCTGTATCAA
GATTCATATCGGCCAGGAATGTCACGCGTGTGGCGAACAAACGTCAACCC
ACTACACCGCTGAACAGCGTCGCCAGCTCCAACGATGGCCAGGTGCAGCT
GGAGATTTTGTCGCAGCCGGAGCAACAGCACCGGGCACGCTATCAAACGG
AGGGCAGCCGCGGTGCCGTCAAGGATCGCAGCGGCAATGGATTCCCGATC
GTCCGACTGACCGGATACGATAAGGTTGCCGTCCTCCAGGTCTTCATCGG
CACGGACATTGGACGCGTGGCACCGCACATGTTCTATCAGGCCTGCAAGG
TTGCCGGCAAGAACTCGACGCAGTGCAACGAGAAGAAGGTCGACGGCACC
ATGGTCATTGAGATCGATTTCAAGCCCGAAACGGACATGACCATCACATG
CGATTGCGTTGGAATCTTGAAGGAACGCAATGTGGATGTGGAGCACCGAT
TTCCCGAGCATCTGGCGCAAAAGAACAAGAAGAAATCGACTCGCTGCCGG
ATGGTGTTCCGCACCCAGCTGACCCGTGACGATGGCACCACCGAGACCCT
CCAGGTCTGCTCGAATCCAATCATCTGCACTCAACCACCTGGCGTGCCGG
AAATATGCAAGAAATCCTTAAACTCATGTCCCGTTGATGGCGGCCTCGAG
CTTTTCATTATCGGCAAGAACTTTCTGAAGGACACACACGTGGTGTTTCA
GGAGACATACGACAGCGTCAACGGTGACGATCCGGCCACGGAAATTGCAG
TGCGCCAGCAGCTCATCGGCGGTACAGCCGCTCTTTGGGAACAGAGTGTT
CTGCCGGATAAGGAGTACCTTCACCAGACTCATCTGATATGCACGGTGCC
ACCGTATCTGCACCAGAACATCCTGAAACCGGTCCAGGTTCAAGTGTCGA
TCGTCTCCAGCGGCAAGAAGAGCGAACCGCATACGTTCACCTACACGGCC
AAGGGACAGTACACGACGCTGGCGGCGGCCAGCACGTTAAGTAACACAAT
CCACGCCCAAGCAATTTAGAAGCTTTCTAGACCAT
BS28971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NFAT-RE | 1803 | CG11172-PE | 1..1803 | 17..1819 | 9015 | 100 | Plus |
| NFAT-RH | 3747 | CG11172-PH | 1..1795 | 17..1811 | 8975 | 100 | Plus |
| NFAT-RC | 3747 | CG11172-PC | 1..1795 | 17..1811 | 8975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NFAT-RE | 6009 | CG11172-RE | 370..2182 | 7..1819 | 9020 | 99.8 | Plus |
| NFAT-RH | 5049 | CG11172-RH | 395..2199 | 7..1811 | 8980 | 99.8 | Plus |
| NFAT-RC | 5935 | CG11172-RC | 370..2174 | 7..1811 | 8980 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13654782..13655205 | 800..1223 | 2120 | 100 | Plus |
| X | 23542271 | X | 13649654..13650067 | 388..801 | 2070 | 100 | Plus |
| X | 23542271 | X | 13645548..13645805 | 7..264 | 1245 | 98.8 | Plus |
| X | 23542271 | X | 13655528..13655775 | 1380..1627 | 1240 | 100 | Plus |
| X | 23542271 | X | 13655848..13656034 | 1625..1811 | 935 | 100 | Plus |
| X | 23542271 | X | 13655295..13655459 | 1215..1379 | 810 | 99.4 | Plus |
| X | 23542271 | X | 13649376..13649501 | 263..388 | 630 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2902 | 649..774 | 328 | 75.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2983 | 549..759 | 284 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2823..2999 | 589..769 | 265 | 63.2 | Plus |
BS28971.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:10 Download gff for
BS28971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NFAT-RE | 370..2172 | 17..1819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:25 Download gff for
BS28971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NFAT-RE | 380..2182 | 17..1819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:34 Download gff for
BS28971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NFAT-RE | 380..2182 | 17..1819 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:34 Download gff for
BS28971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13655851..13656041 | 1628..1819 | 97 | | Plus |
| X | 13645558..13645804 | 17..263 | 100 | -> | Plus |
| X | 13649377..13649501 | 264..388 | 100 | -> | Plus |
| X | 13649655..13650067 | 389..801 | 100 | -> | Plus |
| X | 13654784..13655204 | 802..1222 | 100 | -> | Plus |
| X | 13655303..13655459 | 1223..1379 | 100 | -> | Plus |
| X | 13655528..13655775 | 1380..1627 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:25 Download gff for
BS28971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13539591..13539837 | 17..263 | 100 | -> | Plus |
| arm_X | 13543410..13543534 | 264..388 | 100 | -> | Plus |
| arm_X | 13543688..13544100 | 389..801 | 100 | -> | Plus |
| arm_X | 13548817..13549237 | 802..1222 | 100 | -> | Plus |
| arm_X | 13549336..13549492 | 1223..1379 | 100 | -> | Plus |
| arm_X | 13549561..13549808 | 1380..1627 | 100 | -> | Plus |
| arm_X | 13549884..13550074 | 1628..1819 | 97 | | Plus |
BS28971.pep Sequence
Translation from 16 to 1818
> BS28971.pep
MRFTYNQYKHYESGYRIPSKMHNLSHNNNNNSNNNNNGGGHTNNNNNGNN
SGHHYAHHNNSNNGGNNNTNFQAYQHHYKSNFGMRMTMSTNSTMSARIHR
KGFRIPSKRQPGKGLPGKLHTITRTGPGKMVPGKRIPQRPHPPPCDNSND
SGLGFDQHTELRSSAGAGGVTDPAANGGSGSNSGQRSSLLVNSALTNTVA
AAAAAAAAAVASNTLQQHQQHHQQQQQQQQQQQQQQQQQQQQQQQQQHSP
QQHLIRAIPVSRFISARNVTRVANKRQPTTPLNSVASSNDGQVQLEILSQ
PEQQHRARYQTEGSRGAVKDRSGNGFPIVRLTGYDKVAVLQVFIGTDIGR
VAPHMFYQACKVAGKNSTQCNEKKVDGTMVIEIDFKPETDMTITCDCVGI
LKERNVDVEHRFPEHLAQKNKKKSTRCRMVFRTQLTRDDGTTETLQVCSN
PIICTQPPGVPEICKKSLNSCPVDGGLELFIIGKNFLKDTHVVFQETYDS
VNGDDPATEIAVRQQLIGGTAALWEQSVLPDKEYLHQTHLICTVPPYLHQ
NILKPVQVQVSIVSSGKKSEPHTFTYTAKGQYTTLAAASTLSNTIHAQAI
*
BS28971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NFAT-PE | 600 | CG11172-PE | 1..600 | 1..600 | 3185 | 100 | Plus |
| NFAT-PH | 1248 | CG11172-PH | 1..600 | 1..600 | 3178 | 99.7 | Plus |
| NFAT-PC | 1248 | CG11172-PC | 1..600 | 1..600 | 3178 | 99.7 | Plus |
| NFAT-PG | 562 | CG11172-PG | 45..562 | 83..600 | 2701 | 100 | Plus |
| NFAT-PD | 1210 | CG11172-PD | 45..562 | 83..600 | 2694 | 99.6 | Plus |
