BS28973.complete Sequence
1871 bp assembled on 2012-04-30
GenBank Submission: KX801823
> BS28973.complete
GAAGTTATCAGTCGACATGAACAGCTTAGTGCGACGCAGCGCCCAGCAGC
TGAGCCTCTGGCGTACATATTGCATAAAGCACAATGCTTCAGAGGCGGCT
TCTCCCGGACGGAACGCAGGCAGGCCCAACTACGAGGAGTTCATTGGCCG
TCATCAGCGACAGGCCCAGTGCAGCATTGTGGTCCAGGTGAGCTCCGAAA
AGTCGTATGAGGAGTTGTATAACTACTGCAGCAGCTTCGGCTCGATCATG
GGTGCCCACCACTACTGCGTGCGGCAGGACGAGACCCTGCACTACATCCT
GCTGGAGTACGCCACGTCGGACGAGGCGGCGGCTGCCATCGGAGCGGGCG
TTACCAATGGCGAGCTGAGCGGCGTGCCCGTGCGATCTCCCTTTCTGTGG
TTCCGGGCAGCGGGAGGAGGCAGACGGAGCCCCAAGCTAGTTGCCAATAC
AGCGCCCGCACTGCTATCCTTGGACGGCACCCGGCAGGTGGATCAGCGCC
ACCTACTGGGGCTCTTACGTGGTGCAGCGGACATCGAAGAGCAGGTGCAG
CAGCTGTACGAGCACACGCGCCTGAATGAGCTGGGAATCCGTATGCGCTT
TCTAGCCGCCCTACAGGTGCAGCAGGCCATTGCCGGCATGTTTCCCGCCG
CCCAGGCACAGCCCTTTGGCTCGTCGGTCAACGGATTTGGGCGAATGGGC
TGCGACCTGGACCTCATCCTGCGCTTTGACAGCGATATGGGAGCTAAGAT
CCCACTGGAGGCGGCGGTGCCCTCGCGACTCGTGTACCACACCAAGGAGA
ACCTGAGCAACGGACGCTCGCAGACGCAAAGGCACATGGAATGTTTTGGA
GATATGCTGCATCTGTTCCTGCCCGGCGTGTGCCATGTGAGACGTATTTT
GCAGGCGAGGGTGCCCATCATCAAGTACCACCATGAGCATCTGGACCTGG
AGGTGGACCTCTCCATGAGTAACCTCACTGGCTTTTATATGTCGGAACTG
CTTTACATGTTCGGTGAAATGGATCCGCGCGTACGGCCGTTGACCTTTAC
CATTCGGCGCTGGGCGCAGACCTGCGGCCTCACGAATCCCTCGCCTGGTC
GCTGGATCAGCAACTTCTCGCTCACCTGCCTGGTCATGTTCTTCCTGCAG
CAGCTGCGCCAGCCCATCCTTCCCACAATTGGAGCGCTGGCCAAGGCGGC
GGAGCCAGGGGACTCGCGGGTCACCGAGGACGGGATCAACTGCACCTTCA
CCCGGAATGTGGATCGTCTGGGCTTCAGGAGTCGAAACCAAAGCTCGCTG
AGCGAGTTGTTGCTGCAGTTCTTCGAGTTCTACTCGCAGTTCGACTTCCA
CAACCGTGCGATATCTTTGAACGAGGGAAAGCCGCTGTCCAAGCCGGATC
ACTCGGCCATGTACATCGTAAACCCACTGGAGCAGTTGCTAAATGTGAGC
AAAAATGTTAGCCTGGAGGAGTGTGAACGACTGCGCATCGAGGTGCGGAA
CGCGGCTTGGGTTCTGGAGTCGGAGGTGGAGAATGCCTCCGTTCCGGAGG
GCGACGGCCAGGAGCTCTCCTGCGGCCTGTTGAACCTGTTTAAGCATCCC
GAAAAGGCCGTCATCCGGCCGAACATGTTCTTCAAGCCGCGCATGGTCGA
AGTGAGCGATCTCTTCGAACAGAAGGAGGCGGGAGCAACGTCCAGCTCAA
CTCCTCCCACACCAGCCATAACCTACAAGAGTGCCTCTGTGCGGCAGCAG
GTGCAGAGCATCAAGGCTGCTACGCGCTCCGAACTAAAGCAGCTGCGCGG
ATCAGGCAGCTCAGTTCCGACGAGCAGTCCCAATAATCGACGGCGAAGCA
GGTGAAAGCTTTCTAGACCAT
BS28973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11418-RC | 1839 | CG11418-PC | 1..1839 | 17..1855 | 9195 | 100 | Plus |
| CG11418-RA | 1839 | CG11418-PA | 1..1839 | 17..1855 | 9195 | 100 | Plus |
| CG11418-RB | 867 | CG11418-PB | 1..867 | 989..1855 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11418-RC | 2243 | CG11418-RC | 111..1950 | 16..1855 | 9200 | 100 | Plus |
| CG11418-RA | 2319 | CG11418-RA | 111..1950 | 16..1855 | 9200 | 100 | Plus |
| CG11418-RB | 1374 | CG11418-RB | 125..1005 | 975..1855 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1345241..1346120 | 1855..976 | 4400 | 100 | Minus |
| X | 23542271 | X | 1348222..1349080 | 975..117 | 4295 | 100 | Minus |
| X | 23542271 | X | 1349143..1349247 | 120..16 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:49:53 has no hits.
BS28973.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:29 Download gff for
BS28973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 112..1949 | 17..1854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:40 Download gff for
BS28973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 112..1949 | 17..1854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:48 Download gff for
BS28973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 112..1949 | 17..1854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:48 Download gff for
BS28973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1345242..1346120 | 976..1854 | 100 | <- | Minus |
| X | 1348222..1349077 | 120..975 | 100 | <- | Minus |
| X | 1349144..1349246 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:40 Download gff for
BS28973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1239275..1240153 | 976..1854 | 100 | <- | Minus |
| arm_X | 1242255..1243110 | 120..975 | 100 | <- | Minus |
| arm_X | 1243177..1243279 | 17..119 | 100 | | Minus |
BS28973.pep Sequence
Translation from 16 to 1854
> BS28973.pep
MNSLVRRSAQQLSLWRTYCIKHNASEAASPGRNAGRPNYEEFIGRHQRQA
QCSIVVQVSSEKSYEELYNYCSSFGSIMGAHHYCVRQDETLHYILLEYAT
SDEAAAAIGAGVTNGELSGVPVRSPFLWFRAAGGGRRSPKLVANTAPALL
SLDGTRQVDQRHLLGLLRGAADIEEQVQQLYEHTRLNELGIRMRFLAALQ
VQQAIAGMFPAAQAQPFGSSVNGFGRMGCDLDLILRFDSDMGAKIPLEAA
VPSRLVYHTKENLSNGRSQTQRHMECFGDMLHLFLPGVCHVRRILQARVP
IIKYHHEHLDLEVDLSMSNLTGFYMSELLYMFGEMDPRVRPLTFTIRRWA
QTCGLTNPSPGRWISNFSLTCLVMFFLQQLRQPILPTIGALAKAAEPGDS
RVTEDGINCTFTRNVDRLGFRSRNQSSLSELLLQFFEFYSQFDFHNRAIS
LNEGKPLSKPDHSAMYIVNPLEQLLNVSKNVSLEECERLRIEVRNAAWVL
ESEVENASVPEGDGQELSCGLLNLFKHPEKAVIRPNMFFKPRMVEVSDLF
EQKEAGATSSSTPPTPAITYKSASVRQQVQSIKAATRSELKQLRGSGSSV
PTSSPNNRRRSR*
BS28973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11418-PC | 612 | CG11418-PC | 1..612 | 1..612 | 3167 | 100 | Plus |
| CG11418-PA | 612 | CG11418-PA | 1..612 | 1..612 | 3167 | 100 | Plus |
| CG11418-PB | 288 | CG11418-PB | 1..288 | 325..612 | 1480 | 100 | Plus |
| wisp-PB | 1372 | CG15737-PB | 1016..1237 | 218..454 | 225 | 29.2 | Plus |
| wisp-PC | 1373 | CG15737-PC | 1017..1238 | 218..454 | 225 | 29.2 | Plus |
