BS28974.complete Sequence
1985 bp assembled on 2012-04-30
GenBank Submission: KX803008
> BS28974.complete
GAAGTTATCAGTCGACATGTCAAAGGACGCTAATCCCAAGGAGGCGCTCA
TAAAGGCGGCTTACGCTGATGTGAATAAGTTCGGCAATAACCAGGAGTTT
GACAAGGCTGTCAAGGCAGTGAATCGCATCCTAGGCGTAGCGCCCGACGA
TCCCACCGCCCTGCACTGCAAGGTAGTCTGCCTGGTGCAGCTTTCCAAGT
TCGAGGAGGCCTACAAGTTTATTGAGAAAAATCGACTGTCCTCGCTTTTC
TTTGAGAAGGCCTACTGCGAGTACCAACTTAACAAGCAGCAGCAAGCGCT
TAAGACCATAGACGATGCGGGTCTGCAGCCCCTGCCTCCGAACCTTAAGG
AGCTCCGAACCCAGGTCCTGTACCGCTTGGAGCGCTACGATGAGTGCCTA
GACTCCTATCGCGACATCATTAAGAACACCAGTGACGAGTACGAGGAAGA
GCGTCGGACCAATCTCAGCGCCGTGGCCGCCAACTTGGCTGTGGATCAGA
CCAAGGAGGTGCCCGAGGTGCCGGAAGACACCTACGAGCAGTACTTCAAC
AGCGCGTGCATCCAGGCTAATCGGCAGAAGTATGCTGAAGCCGAGCGCAA
GTTGCGCACCAGCGAGAAGCTCTGTCTTGAGGATGAGTGTGCCTCCGAGG
AGGAGATCATTGAAGAGGTAGACGTCATTCGCGTCCAACTGGCCTATGTC
CTCCAACTGCAGGGCAAGACCAAGGAGGCGTCCAGCATCTACGCGGACTG
CCTGCGTCATAAGCCAAAGGACGCAGCCCTGGTGGCCGTGGCAAGCAACA
ACTTGGTGGTGGTCAATAAGGACCAGAACGTCTTCGATTCCAAGAAGAAG
ATACGCGCTGCCCTAGCCGACGCCTGTGAGTCTAGGCTCACCTCGCGCCA
GAAGCAGGTCATAGCCCTCAACAACTGTCTGCTAGCACTTTACACTAATG
CCGGCGACCAAGTGCAACAGCTTAGCCAAAAGCTAGCTCAGACCTACCCG
CAGGTGGAATTCGAGGCGCTGCTCATTCGCTGCACCCAGCTGGCCAAAGA
TCGCAAGCACAAGGAGGCCATCGAGCAGCTACAAAAGTTCGCTGCAGCCC
ACAAGTCGCACGAATTCGTCAGCAAATTTGCCATCATACAACTTCAGCTG
CTTCAGGGCAACCGCAAGGATGCAATTGAAACACTGCTGTCATTGGGCGA
AGCCAAGTACAAGCCTGGCGTTGTCTCCGCTCTAGTATCCCTTTATCTAG
GCACGGACAACAAGACAGCAGCCTCTGCGCTGCTGAAGTCCGCCGTCGAC
TGGTACAAGAAGAACGAGGTGAGCAGTGGTGATCTGTCGGACATGTGGCG
ACAGGCAGCCGAGTTCCATTTGCGTGGTGGCGCGTCCGAGACGGCCGCTA
GCTCCCTGGAGGAACTACTTAAGCTGAACCCCAACGACACCAAGGTCTTG
GCCCAGTTGGTCATCGCCTACGCCCAGTTTCAGCCCAAGAGGGCTCTTGA
GTTAAGCAGAAAGCTGCCCAAACTGGAAACGTTGACCACTGCTTCCGAAA
TCGACGCCCTAGAGGCGGCCAACTGGGTGATGTCAGCTAAGGCGGCCAAG
AAGACTGCCAATACCAAGGTCGAACCCTCGCCGAGCACACCGCTAGAGAA
AAAGAAGAACAGGAACCGTAAACGAAAGGGCAAGCTCCCCAAGAACTACA
ACGCCGAAGTGGCTCCTGATCCAGAGCGCTGGCTGCCCAAGTACGAGCGC
ACAGGCTTCCGAAAGAAGCGAGGTGGCGCTCGCGGCAAAGATGTCATTAA
GGGCTCCCAGGGCATGGCCTCAGGAGCAGCCGATCAATACGACATGTCCA
GCCGCGTGAATCTGACCAAGAACTCCCCCGCCACACCCGTTTACCAGGAA
ACAGCTCCAGGTCCAAGGCAGCAGCACCGCAAAGGTGGCCACAAAAAGAA
GAAGGGCGGTCGCTTCTAAAAGCTTTCTAGACCAT
BS28974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp72-RA | 1953 | CG5434-PA | 1..1953 | 17..1969 | 9765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp72-RA | 2149 | CG5434-RA | 115..2068 | 17..1970 | 9770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20588998..20590026 | 129..1157 | 5145 | 100 | Plus |
| 3R | 32079331 | 3R | 20590080..20590770 | 1149..1839 | 3440 | 99.9 | Plus |
| 3R | 32079331 | 3R | 20590829..20590959 | 1840..1970 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 20588825..20588936 | 17..128 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:50:07 has no hits.
BS28974.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:30 Download gff for
BS28974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp72-RA | 111..2061 | 17..1967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:43 Download gff for
BS28974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp72-RA | 115..2065 | 17..1967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:55 Download gff for
BS28974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp72-RA | 115..2065 | 17..1967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:55 Download gff for
BS28974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20588825..20588936 | 17..128 | 100 | -> | Plus |
| 3R | 20588998..20590025 | 129..1156 | 100 | -> | Plus |
| 3R | 20590088..20590770 | 1157..1839 | 100 | -> | Plus |
| 3R | 20590829..20590956 | 1840..1967 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:43 Download gff for
BS28974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16414547..16414658 | 17..128 | 100 | -> | Plus |
| arm_3R | 16414720..16415747 | 129..1156 | 100 | -> | Plus |
| arm_3R | 16415810..16416492 | 1157..1839 | 100 | -> | Plus |
| arm_3R | 16416551..16416678 | 1840..1967 | 100 | | Plus |
BS28974.pep Sequence
Translation from 16 to 1968
> BS28974.pep
MSKDANPKEALIKAAYADVNKFGNNQEFDKAVKAVNRILGVAPDDPTALH
CKVVCLVQLSKFEEAYKFIEKNRLSSLFFEKAYCEYQLNKQQQALKTIDD
AGLQPLPPNLKELRTQVLYRLERYDECLDSYRDIIKNTSDEYEEERRTNL
SAVAANLAVDQTKEVPEVPEDTYEQYFNSACIQANRQKYAEAERKLRTSE
KLCLEDECASEEEIIEEVDVIRVQLAYVLQLQGKTKEASSIYADCLRHKP
KDAALVAVASNNLVVVNKDQNVFDSKKKIRAALADACESRLTSRQKQVIA
LNNCLLALYTNAGDQVQQLSQKLAQTYPQVEFEALLIRCTQLAKDRKHKE
AIEQLQKFAAAHKSHEFVSKFAIIQLQLLQGNRKDAIETLLSLGEAKYKP
GVVSALVSLYLGTDNKTAASALLKSAVDWYKKNEVSSGDLSDMWRQAAEF
HLRGGASETAASSLEELLKLNPNDTKVLAQLVIAYAQFQPKRALELSRKL
PKLETLTTASEIDALEAANWVMSAKAAKKTANTKVEPSPSTPLEKKKNRN
RKRKGKLPKNYNAEVAPDPERWLPKYERTGFRKKRGGARGKDVIKGSQGM
ASGAADQYDMSSRVNLTKNSPATPVYQETAPGPRQQHRKGGHKKKKGGRF
*
BS28974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp72-PA | 650 | CG5434-PA | 1..650 | 1..650 | 3301 | 100 | Plus |
