BS28975.complete Sequence
1727 bp assembled on 2012-04-30
GenBank Submission: KX800886
> BS28975.complete
GAAGTTATCAGTCGACATGTCGCAAACCCAGAGCATAACACCCATTCCCA
GCACACCGCCGCCTTCACGGCGGGCAAATCGACCGCCCAGGATCAACATC
CACAATCTGACCAGCGGATCGGCAATGAGCCAGGCATCGATGCCACCCAG
TGCCCAGCCACCCTATACGGCCCAAACGAACTTCACGGGCAATGGAACAC
AGGGACCCTACTGGCCACCAATGGCCAATCCCTTCGGATACGGCAACTTT
ATGACCAAGGGCTACGAGGGCTTCCTCGATATCACAAAGTCGGGCTTGAG
CTTCGGCGAGAAGATGACCTTCGGCATGTACAAGTGGTCGCGCCGATGGT
TCACCCACATCTTCCTCATCCTCATCCTGGCACTATACAATATCGGCGGT
GCCGTTGTATTCCGCACAATCGAAGTTCGTCATGCAAATCAGGAAAAGCT
GGTGGTGCAGGATCAGCAAAAGAGTTTCTTCAATGAAATGCGTCAGGTTT
CCGGCGATCTGAGCGGGTTGAGCAAACTTGAATTCGAGGGTCAGGTGCTG
CGCATCATGAACACCTATCCAACGGTGGTGCAATCACTATTGCGATCCGG
AATGGTAGACAATACGGATCCGTGGTCCTTCTGGGATGCCATGGTCTATT
CCGCTACGATTTACACGACCATAGGTTACGGCCACATCACTCCAAAGACG
GGCATGGGTCGATCCCTGACCATCGTCTATGCCATCATCGGCATCCCCAT
GTTCCTGATCGTGCTGGCCGATCTGGGCAAGTTATTCACGCGCTGCGTCA
AGTTCCTGTGGGTGTATGTGCGACGGATGTACTACACGCGCTCCTGCCGC
CGGATACGAAAGCAGCAGCAGATCCGGAGCGCCATGACAGGCTTCAATAC
GATGTACGACATGGCCATCCGCAGGCCGAGCATGTTCTTCAGCAACTCTG
CGCCAGAGAACGATGAGGAGTCGCAGGCGGATGCCGAGGCCGCAAGATCG
GTGGGCACCTCGCACCCGGAGACACCCACATCACCCTATCCAGAGACCTT
CGAGGTGGACGACGAGTTCAATTTGCCAGTGTCGGTGGCCTCGCTGCTGC
TCATTACGTACATCCTCCTAGGATCCTTCGGCTTTCTAATGATGGAGCCC
AGCTGGACTCCACTGGATGCCTTCTACTACGTGTTCATCTCGATGTCCAC
AATTGGGTTCGGCGACCTGGTGCCCAGTAATCCCTTCTACGTAATGGTCA
GCATGATCTATCTGATGTTCGGCTTGGCCCTGACCTCCATGTTCATCAAT
GTGGTGCAGATCAAGCTGAGCGATCACTTCAAAATGGCCAGCGCCAAAGT
GGGCGCCACCATTGGCATGAACATGACCAGCGAGCTTGGTGATGAGGGCG
GCTCCCAGGTGAAGACTCCCTCCGAGCTTGCCTCGGTGCACGGTTCGCGA
CTGGACAGGATCGAGGAGGATGGCCAGGAGGCGAATGGCAATGGCCACTC
CCCGGTGCCACCACTCACCTCGATCCTGCGCGCACCGCGTCCTCTATCGC
CGGCGTCCAATGGAGTGGATGCTAATGGAGTTGGAGCCGATGCTGTTGGA
GCTGGGGATGTTACTCCGCCACCTCTGCTGCCCAGGCGTCAGGTTTCCGT
GGATCCCCAGCCGCCGGCGGAGGGGGAGAACAAGAAGAAGAAAAAGCACA
GGTTTTTCTAGAAGCTTTCTAGACCAT
BS28975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34396-RC | 1695 | CG34396-PC | 1..1695 | 17..1711 | 8475 | 100 | Plus |
| CG34396-RD | 2928 | CG34396-PD | 1881..2928 | 664..1711 | 5210 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34396-RC | 2175 | CG34396-RC | 278..1975 | 16..1713 | 8490 | 100 | Plus |
| CG34396-RD | 3484 | CG34396-RD | 2235..3284 | 664..1713 | 5220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21100213..21101253 | 673..1713 | 5205 | 100 | Plus |
| 2R | 25286936 | 2R | 21092499..21092908 | 16..425 | 2050 | 100 | Plus |
| 2R | 25286936 | 2R | 21093755..21093914 | 517..676 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 21093592..21093685 | 424..517 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:50:18 has no hits.
BS28975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:31 Download gff for
BS28975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34396-RC | 263..1957 | 17..1711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:47 Download gff for
BS28975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34396-RC | 279..1973 | 17..1711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:58 Download gff for
BS28975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34396-RC | 279..1973 | 17..1711 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:58 Download gff for
BS28975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21092500..21092908 | 17..425 | 100 | -> | Plus |
| 2R | 21093594..21093685 | 426..517 | 100 | -> | Plus |
| 2R | 21093756..21093912 | 518..674 | 100 | -> | Plus |
| 2R | 21100215..21101251 | 675..1711 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:47 Download gff for
BS28975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16980005..16980413 | 17..425 | 100 | -> | Plus |
| arm_2R | 16981099..16981190 | 426..517 | 100 | -> | Plus |
| arm_2R | 16981261..16981417 | 518..674 | 100 | -> | Plus |
| arm_2R | 16987720..16988756 | 675..1711 | 100 | | Plus |
BS28975.pep Sequence
Translation from 16 to 1710
> BS28975.pep
MSQTQSITPIPSTPPPSRRANRPPRINIHNLTSGSAMSQASMPPSAQPPY
TAQTNFTGNGTQGPYWPPMANPFGYGNFMTKGYEGFLDITKSGLSFGEKM
TFGMYKWSRRWFTHIFLILILALYNIGGAVVFRTIEVRHANQEKLVVQDQ
QKSFFNEMRQVSGDLSGLSKLEFEGQVLRIMNTYPTVVQSLLRSGMVDNT
DPWSFWDAMVYSATIYTTIGYGHITPKTGMGRSLTIVYAIIGIPMFLIVL
ADLGKLFTRCVKFLWVYVRRMYYTRSCRRIRKQQQIRSAMTGFNTMYDMA
IRRPSMFFSNSAPENDEESQADAEAARSVGTSHPETPTSPYPETFEVDDE
FNLPVSVASLLLITYILLGSFGFLMMEPSWTPLDAFYYVFISMSTIGFGD
LVPSNPFYVMVSMIYLMFGLALTSMFINVVQIKLSDHFKMASAKVGATIG
MNMTSELGDEGGSQVKTPSELASVHGSRLDRIEEDGQEANGNGHSPVPPL
TSILRAPRPLSPASNGVDANGVGADAVGAGDVTPPPLLPRRQVSVDPQPP
AEGENKKKKKHRFF*
BS28975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34396-PC | 564 | CG34396-PC | 1..564 | 1..564 | 2955 | 100 | Plus |
| CG34396-PD | 975 | CG34396-PD | 529..975 | 116..564 | 1849 | 82 | Plus |
| CG8713-PA | 395 | CG8713-PA | 12..372 | 98..431 | 357 | 27.8 | Plus |
| CG9194-PA | 729 | CG9194-PA | 40..224 | 113..288 | 233 | 28.6 | Plus |
| CG43155-PC | 411 | CG43155-PC | 56..218 | 108..261 | 181 | 33.3 | Plus |
