BS28976.complete Sequence
1430 bp assembled on 2012-04-19
GenBank Submission: KX802924
> BS28976.complete
GAAGTTATCAGTCGACATGTACGCCTATAATAAGATGGGTCGGGTTCCAG
AGCTTGTTATATGCTCCTTCATAGTGGTCACCCTGCTGGTCATACACTTC
TTCTCTGATCTGCTGAGAGCCTCCCTAGGCGGCTACTACAACCAGGATGT
TACACTTTCCCAGCTGGTTGAGTCGCAGAACTCGGACTACGCATGGTTCC
TTAAGCTGCTGGTCAATTGCTTTGGTTATAGCTGCGTCTTTGTGCCGGGC
TTCTTGATCTACAAATATGTCGGCAGGATTAACTACCTGGAAAGAGGCAA
CAAGACATTCCTGCACAAGGCTATCAATATGTGTATCACGGGTAACTCTG
GATACGATCAGTTGGATGCAGGGACCAGCACCGCGGATAAGGATCGTCCG
GCAGCCTCTACGGCACCAAAGCGAACGAGTTCCCAGGAGGCCGTGCAACT
ATTATGGTGCTTTGGCGGCCTGATGATCTCCTATCTTACCTGGGGTGTAC
TGCAGGAGAAGATAATGACTCAAAACTATCTGAACTTCACTGGAGAAAGT
GCCAAGTTTAAGGACTCTCAGTTCCTGGTGTTTTCCAATCGTCTGCTGGC
CTTTCTCGTGGCGCTGGCCTATCTACAATGGCAGCCCTCACCTGTGCGAC
ACCGTGCACCTCTGTACAAATACTCCTATGCCTCCTTCTCGAATATAATG
AGCGCATGGTTCCAGTACGAGGCCCTGAAGTTTGTCAACTTTCCCACCCA
GGTGCTGGCCAAATCGTGTAAGATTATACCCGTTATGCTGATGGGCAAAA
TCATGTCTAAGGCAAAGTACGAGAGTTACGAGTATGTGACGGCCCTGCTC
ATATCGCTGGGCATGATCTTCTTCATGAGCGGCTCCTCGGACAGCAGCAA
GGCCAGCGGAGTGACCACGCTCACGGGCATTTTCCTGCTCTCCATGTACA
TGGTCTTCGACAGCTTCACTGCCAATTGGCAGGGATCGCTCTTCAAGAGC
TACGGCATGACTCCGTTGCAGATGATGTGCGGCGTCAACCTGTTTTCCTC
CATTTTCACTGGAGCCTCGCTGTCCATGCAGGGAGGATTCATGGACTCCT
TGGCATTTGCTACAGAGCATCCTAAGTTTGTGTTTGATATGGTTGTGCTT
TCCGTTTGTTCAGCGGTCGGACAATTGTTTATCTATCATACAATTGATGT
CTTCGGCCCAGTTGTGTTTACGATAATAATGACACTGCGTCAGGCGGTGG
CCATTATGCTCTCCTGCTTCATCTACCAGCACAGCATATCGCTGTTGGGC
ATCTTCGGTGTTCTGATCGTTTTCGTTGCCATCTTCCTGAGGGTCTACTG
CACCCAGCGGTTGAGGGCCATTCGGAAGCGGGCCGAGGCCAACAAACCGA
AAATGGCTGTCTAAAAGCTTTCTAGACCAT
BS28976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sll-RB | 1398 | CG7623-PB | 1..1398 | 17..1414 | 6960 | 99.9 | Plus |
| sll-RA | 1398 | CG7623-PA | 1..1398 | 17..1414 | 6960 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sll-RB | 1994 | CG7623-RB | 364..1763 | 15..1414 | 6970 | 99.9 | Plus |
| sll-RA | 1987 | CG7623-RA | 357..1756 | 15..1414 | 6970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17606626..17607680 | 63..1117 | 5245 | 99.8 | Plus |
| 3R | 32079331 | 3R | 17608137..17608310 | 1241..1414 | 870 | 100 | Plus |
| 3R | 32079331 | 3R | 17607931..17608059 | 1116..1244 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 17606517..17606565 | 15..63 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:35:04 has no hits.
BS28976.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:37 Download gff for
BS28976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sll-RA | 363..1758 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:58 Download gff for
BS28976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sll-RA | 359..1754 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:49 Download gff for
BS28976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sll-RA | 359..1754 | 17..1412 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:49 Download gff for
BS28976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17607933..17608058 | 1118..1243 | 100 | -> | Plus |
| 3R | 17608140..17608308 | 1244..1412 | 100 | | Plus |
| 3R | 17606519..17606565 | 17..63 | 100 | -> | Plus |
| 3R | 17606627..17607680 | 64..1117 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:58 Download gff for
BS28976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13433655..13433780 | 1118..1243 | 100 | -> | Plus |
| arm_3R | 13433862..13434030 | 1244..1412 | 100 | | Plus |
| arm_3R | 13432241..13432287 | 17..63 | 100 | -> | Plus |
| arm_3R | 13432349..13433402 | 64..1117 | 99 | -> | Plus |
BS28976.pep Sequence
Translation from 16 to 1413
> BS28976.pep
MYAYNKMGRVPELVICSFIVVTLLVIHFFSDLLRASLGGYYNQDVTLSQL
VESQNSDYAWFLKLLVNCFGYSCVFVPGFLIYKYVGRINYLERGNKTFLH
KAINMCITGNSGYDQLDAGTSTADKDRPAASTAPKRTSSQEAVQLLWCFG
GLMISYLTWGVLQEKIMTQNYLNFTGESAKFKDSQFLVFSNRLLAFLVAL
AYLQWQPSPVRHRAPLYKYSYASFSNIMSAWFQYEALKFVNFPTQVLAKS
CKIIPVMLMGKIMSKAKYESYEYVTALLISLGMIFFMSGSSDSSKASGVT
TLTGIFLLSMYMVFDSFTANWQGSLFKSYGMTPLQMMCGVNLFSSIFTGA
SLSMQGGFMDSLAFATEHPKFVFDMVVLSVCSAVGQLFIYHTIDVFGPVV
FTIIMTLRQAVAIMLSCFIYQHSISLLGIFGVLIVFVAIFLRVYCTQRLR
AIRKRAEANKPKMAV*
BS28976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sll-PB | 465 | CG7623-PB | 1..465 | 1..465 | 2395 | 100 | Plus |
| sll-PA | 465 | CG7623-PA | 1..465 | 1..465 | 2395 | 100 | Plus |
| meigo-PB | 338 | CG5802-PB | 15..308 | 151..441 | 295 | 25.8 | Plus |
| meigo-PA | 338 | CG5802-PA | 15..308 | 151..441 | 295 | 25.8 | Plus |
| Papst2-PA | 396 | CG7853-PA | 19..385 | 107..464 | 212 | 21.7 | Plus |
