BS28977.complete Sequence
938 bp assembled on 2012-04-19
GenBank Submission: KX803546
> BS28977.complete
GAAGTTATCAGTCGACATGCACAGGACATATGTAAGCCATGCGATATACG
CCATTTGGCTGGTTATATTCGCCACTGCCGGCATAATGGCCCAGCTAGAC
CTGGATCAGATCCAGACCCAGCTGCCCGACCAGCTGAGGAAGTCAAACTT
TAGCGTGAACGACGCCAAGGAGCTATTTCGCAACAAATGCATCGAGGTGG
CCGGCGAGGAGGCGGGCGTCGAGGCATACGGCGAGATCGAGTCCGGATTC
ATGGTGCTAACCGAGTGCCTCAATGGCATTGTCAACTACACGGCAATGCA
GCAGGAGATACAGGAAGCGTCGCCCAAGGGCGAACTGGATGTGGTCTTCA
ACAAGTACTGCAGCCGGCGTTCGAATGCCGTCGAGTGTGTGGATGCGTTC
ACGGCCAAACTGGTGCCCTGTCTGGTGCAGGAGGAGCGCGAGGGCCAGGA
TGTCATTAAGCAGATCATCCAGAGTCTGCTCAACTTTGTGTGCCACAAGG
ATGGCGATCAGATAGCCCTGTTCATTGCCGAAAAGGGACCCGAATGCATT
GAGTCCCAGAAGGACAACATTCAGCAGTGCGTGAACAGCACGTTCTCCGA
GTACCTGAACGTGTCGGATCTGCAGGACAACCGCATCAGGAGCATGCCCA
AGCTGACGGTCGGTCAGAAACAGTGCGACGAGATGCTGACTCTGCAGGCG
TGTGTGGTCCGTAAACTGGAGCAATGCTCGGACATAACACCGGCGAATCT
CGTCGAGTCCATGTTCAACTTCATTCGGAACCAAACGATGTGCCGTGACA
ATCAGAAATCGCCGCTCGTTGCGGCTGCCGCCAGCGGAGGGAGTCGGGTA
TTCCATCAAGTGTGGACCCATGTGGGCATCTTTTTGCTAATCCTGCGATT
CGCTCTACAAAAGTCTTCTTAGAAGCTTTCTAGACCAT
BS28977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9917-RB | 906 | CG9917-PB | 1..906 | 17..922 | 4530 | 100 | Plus |
| CG9917-RA | 906 | CG9917-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9917-RB | 1726 | CG9917-RB | 203..1109 | 16..922 | 4535 | 100 | Plus |
| CG9917-RA | 1801 | CG9917-RA | 278..1184 | 16..922 | 4535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16322048..16322954 | 922..16 | 4535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:35:17 has no hits.
BS28977.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:38 Download gff for
BS28977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9917-RA | 297..1202 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:59 Download gff for
BS28977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9917-RA | 279..1184 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:53 Download gff for
BS28977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9917-RA | 279..1184 | 17..922 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:53 Download gff for
BS28977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16322048..16322953 | 17..922 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:59 Download gff for
BS28977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16216081..16216986 | 17..922 | 100 | | Minus |
BS28977.pep Sequence
Translation from 16 to 921
> BS28977.pep
MHRTYVSHAIYAIWLVIFATAGIMAQLDLDQIQTQLPDQLRKSNFSVNDA
KELFRNKCIEVAGEEAGVEAYGEIESGFMVLTECLNGIVNYTAMQQEIQE
ASPKGELDVVFNKYCSRRSNAVECVDAFTAKLVPCLVQEEREGQDVIKQI
IQSLLNFVCHKDGDQIALFIAEKGPECIESQKDNIQQCVNSTFSEYLNVS
DLQDNRIRSMPKLTVGQKQCDEMLTLQACVVRKLEQCSDITPANLVESMF
NFIRNQTMCRDNQKSPLVAAAASGGSRVFHQVWTHVGIFLLILRFALQKS
S*
BS28977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9917-PB | 301 | CG9917-PB | 1..301 | 1..301 | 1550 | 100 | Plus |
| CG9917-PA | 301 | CG9917-PA | 1..301 | 1..301 | 1550 | 100 | Plus |
| CG14629-PA | 319 | CG14629-PA | 32..311 | 23..290 | 518 | 37.7 | Plus |
| CG11378-PC | 312 | CG11378-PC | 14..288 | 9..273 | 506 | 38.6 | Plus |
| CG11378-PB | 312 | CG11378-PB | 14..288 | 9..273 | 506 | 38.6 | Plus |
