BS28978.complete Sequence
1136 bp assembled on 2012-04-19
GenBank Submission: KX801198
> BS28978.complete
GAAGTTATCAGTCGACATGATTTGTGTAGCGGGCGTGAGGCTCCAGCTGC
CAACAGCTCCGCCCACCTACAGCATTTATAGCTCCATCTTTCCGCTGAGA
CGAGGTCGTGGACTGACTGGACTGAAGAATCTGGGCAACACCTGCTATAT
GAACAGCATACTGCAGTGCCTGAGCAACACGCCTCAGTTGACCGAGTACT
GCATTTCGGACAAATACAAGAATTACATCAGCAGAAGCAACAAGACTAAT
GGCCAGGTGATCGAAGAGGTGGCTGCACTCATCAAGGAGCTCTGGAATGG
ACAGTACAAGTGTGTGGCCAGCCGAGATTTGAGGTACGTTGTGGGCCAGT
ACCAGAAGATCTTCCGCGGCGTTGACCAGCAGGACTCACACGAATTCCTC
ACCATCCTGATGGACTGGCTGCACTCGGATCTCCAGACCCTACATGTGCC
CCGTCAGCGGGAGATGATCAGTGCGTCGGAAAAGGCTTGGCTGGAATTTA
CCAAGGCGAAGGAGAGCATGATTCTGCATTTATTCTATGGCCAAATGAAG
AGCACTGTGAAATGTGTGGCCTGCCACAAGGAGTCCGCCACGTACGAGAG
TTTTTCTAATCTCAGCCTGGAGCTGCCGCCAAACTCGAATGTATGTCAGC
TGAACCAGTGCATGGACATGTACTTCAGTGGAGAAAGGATCCATGGCTGG
AATTGTCCTAGTTGTAAAACGAAAAGAGATGCCATCAAGAAGCTGGATAT
ATCGAAGCTGCCACCTGTGCTGGTGGTGCATCTTAAGCGCTTCTATGCGG
ATCCCAGTAACTCTGGCTCGTACATGAAGAAGCAGAACTACTTGCGCTTC
CCGCTCGAGAACTTGGACATGAATCCCTACATAGCACGGGCGGAATCGCG
GGCGGTAACACCTAAGACCTACCAGCTGTACGCCGTATCCAATCACTACG
GCACCATGGAAGGCGGGCACTACACGGCATTTTGCAAGAGCGCCAACTAC
GGAAAATGGTTCAAGTTCGACGATCAGGTCGTCTCGGCGTTGGACTCCTC
TAACGTGGTTTCTAGCGCTGCATACATTCTTTTCTACACCTGGCTGCCAC
CCATGCAGGTGCCTCTGTAGAAGCTTTCTAGACCAT
BS28978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubpy-RB | 1104 | CG5798-PB | 1..1104 | 17..1120 | 5520 | 100 | Plus |
| Ubpy-RA | 2691 | CG5798-PA | 1675..2691 | 104..1120 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubpy-RB | 1546 | CG5798-RB | 79..1188 | 17..1126 | 5535 | 99.9 | Plus |
| Ubpy-RA | 3204 | CG5798-RA | 1824..2846 | 104..1126 | 5100 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21137008..21137463 | 334..789 | 2280 | 100 | Plus |
| 3R | 32079331 | 3R | 21137519..21137856 | 789..1126 | 1675 | 99.7 | Plus |
| 3R | 32079331 | 3R | 21136715..21136945 | 104..334 | 1155 | 100 | Plus |
| 3R | 32079331 | 3R | 21136560..21136647 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:35:21 has no hits.
BS28978.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:39 Download gff for
BS28978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RB | 79..1182 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:02 Download gff for
BS28978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RB | 79..1182 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:55 Download gff for
BS28978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RB | 79..1182 | 17..1120 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:55 Download gff for
BS28978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21136560..21136646 | 17..103 | 100 | -> | Plus |
| 3R | 21136715..21136945 | 104..334 | 100 | -> | Plus |
| 3R | 21137009..21137463 | 335..789 | 100 | -> | Plus |
| 3R | 21137520..21137850 | 790..1120 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:02 Download gff for
BS28978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16962282..16962368 | 17..103 | 100 | -> | Plus |
| arm_3R | 16962437..16962667 | 104..334 | 100 | -> | Plus |
| arm_3R | 16962731..16963185 | 335..789 | 100 | -> | Plus |
| arm_3R | 16963242..16963572 | 790..1120 | 100 | | Plus |
BS28978.pep Sequence
Translation from 16 to 1119
> BS28978.pep
MICVAGVRLQLPTAPPTYSIYSSIFPLRRGRGLTGLKNLGNTCYMNSILQ
CLSNTPQLTEYCISDKYKNYISRSNKTNGQVIEEVAALIKELWNGQYKCV
ASRDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHVPRQREM
ISASEKAWLEFTKAKESMILHLFYGQMKSTVKCVACHKESATYESFSNLS
LELPPNSNVCQLNQCMDMYFSGERIHGWNCPSCKTKRDAIKKLDISKLPP
VLVVHLKRFYADPSNSGSYMKKQNYLRFPLENLDMNPYIARAESRAVTPK
TYQLYAVSNHYGTMEGGHYTAFCKSANYGKWFKFDDQVVSALDSSNVVSS
AAYILFYTWLPPMQVPL*
BS28978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubpy-PB | 367 | CG5798-PB | 1..367 | 1..367 | 1962 | 100 | Plus |
| Ubpy-PA | 896 | CG5798-PA | 550..896 | 21..367 | 1814 | 97.7 | Plus |
| CG14619-PH | 565 | CG14619-PH | 235..562 | 29..357 | 574 | 37 | Plus |
| CG14619-PA | 856 | CG14619-PA | 526..853 | 29..357 | 574 | 37 | Plus |
| CG14619-PB | 337 | CG14619-PB | 11..334 | 33..357 | 566 | 37.1 | Plus |
