BS28979.complete Sequence
968 bp assembled on 2012-07-26
GenBank Submission: KX804245
> BS28979.complete
GAAGTTATCAGTCGACATGGCGCTGGTTTACGGGGTTGAAAAGAAGACGG
TACCCACCCACATGAAATTCGTGATGGGCGGAACCTCCGGAATGCTGGCC
ACATGCATTGTCCAGCCGTTGGACCTTCTCAAGACCCGAATGCAGATATC
AGGAACTTTAGGCACACGCGAGTACAAGAACTCATTTGAGGTTCTATCGA
AGGTTTTGAAGAACGAGGGGATATTATCCTTGTACAATGGATTGAGTGCC
GGACTATTGAGACAGGCCACGTACACATCAGCCAAGATGGGTGTTTACCA
GATGGAGTTGGATTGGTATCGCAAGAACTTCGGAAATTATCCATCTATGG
TGGCCAGTATGACGATGGGCATTGTGGCTGGCGCCTTTGGAGCCATGTGT
GGAAATCCAGCGGAGGTGGCCCTGATCCGGATGATGTCCGATAACCGCTT
AATGCCGGAGGACAGGCGTAATTACAAGAATGTGGGTGATGCCTTTGTAA
GAATTGTGAAGGATGAGGGCGTGGTGGCGCTCTGGAGAGGATGCTTGCCG
ACAGTGGGTCGTGCCATGGTCGTGAATATGGTGCAGCTTGCCTCCTATTC
ACTGATGAAGAACCAATTGCATGGGTATCTCAGTGAAGGAATACCTCTTC
ACCTGACCGCCGCCCTGGTGTCTGGTTTGCTGACCTCCGTGACCTCAATG
CCACTGGACATGGCCAAAACACGCATACAGCAGATGAAGGTGATCGATGG
CAAGCCGGAATACAGTGGTACCATCGATGTACTGAAAAAGGTGCTGAAAA
ATGAAGGCGCCTTTGCCGTGTGGAAGGGTTTCACTCCGTATCTAATGCGT
ATGGGTCCACACACGATATTTTCATTTGTCTTCTTGGAGCAAATGAATAA
GGCCTACAGCAAGCATATGCTCAGTGATTCGCTATCCGATTCGGTACCTT
AAAAGCTTTCTAGACCAT
BS28979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18418-RA | 936 | CG18418-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
| CG7514-RA | 906 | CG7514-PA | 65..566 | 87..594 | 570 | 74.6 | Plus |
| CG7514-RA | 906 | CG7514-PA | 616..702 | 647..733 | 195 | 81.6 | Plus |
| CG1907-RA | 954 | CG1907-PA | 685..768 | 680..763 | 195 | 82.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18418-RA | 1142 | CG18418-RA | 80..1018 | 15..953 | 4695 | 100 | Plus |
| CG7514-RA | 1188 | CG7514-RA | 138..639 | 87..594 | 570 | 74.6 | Plus |
| CG7514-RA | 1188 | CG7514-RA | 689..775 | 647..733 | 195 | 81.6 | Plus |
| CG1907-RA | 1623 | CG1907-RA | 1151..1234 | 680..763 | 195 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4689053..4689991 | 953..15 | 4695 | 100 | Minus |
| 3L | 28110227 | 3L | 4688136..4688637 | 594..87 | 570 | 74.6 | Minus |
| 3L | 28110227 | 3L | 4688000..4688074 | 733..659 | 195 | 84 | Minus |
| 3R | 32079331 | 3R | 29620286..29620369 | 680..763 | 195 | 82.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:45:41 has no hits.
BS28979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 14:34:11 Download gff for
BS28979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18418-RA | 82..1015 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:47 Download gff for
BS28979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18418-RA | 82..1015 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:44 Download gff for
BS28979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18418-RA | 82..1015 | 17..950 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:44 Download gff for
BS28979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4689056..4689989 | 17..950 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:47 Download gff for
BS28979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4689056..4689989 | 17..950 | 100 | | Minus |
BS28979.pep Sequence
Translation from 16 to 951
> BS28979.pep
MALVYGVEKKTVPTHMKFVMGGTSGMLATCIVQPLDLLKTRMQISGTLGT
REYKNSFEVLSKVLKNEGILSLYNGLSAGLLRQATYTSAKMGVYQMELDW
YRKNFGNYPSMVASMTMGIVAGAFGAMCGNPAEVALIRMMSDNRLMPEDR
RNYKNVGDAFVRIVKDEGVVALWRGCLPTVGRAMVVNMVQLASYSLMKNQ
LHGYLSEGIPLHLTAALVSGLLTSVTSMPLDMAKTRIQQMKVIDGKPEYS
GTIDVLKKVLKNEGAFAVWKGFTPYLMRMGPHTIFSFVFLEQMNKAYSKH
MLSDSLSDSVP*
BS28979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18418-PA | 311 | CG18418-PA | 1..311 | 1..311 | 1594 | 100 | Plus |
| CG7514-PA | 301 | CG7514-PA | 1..301 | 3..310 | 1046 | 65.9 | Plus |
| CG1907-PA | 317 | CG1907-PA | 11..314 | 9..307 | 878 | 56.9 | Plus |
| Dic1-PC | 280 | CG8790-PC | 13..272 | 21..293 | 419 | 33.8 | Plus |
| Dic1-PA | 280 | CG8790-PA | 13..272 | 21..293 | 419 | 33.8 | Plus |
