Clone BS28981 Report

Search the DGRC for BS28981

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:289
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG11388-RA
Protein status:BS28981.pep: full length peptide match
Sequenced Size:1409

Clone Sequence Records

BS28981.complete Sequence

1409 bp assembled on 2012-05-22

GenBank Submission: KX803820

> BS28981.complete
GAAGTTATCAGTCGACATGGCCAAGAACAGCTTTAAGACTTTAATCAGCC
AGAAACACAAAACGTTTCCGGCGGACCTAAATATGTACGGAATGAAGTGT
AAATCGCAGCTGCTGGAGGATCAGGAGAACGTGACCCTGATCATCAATCG
GCGGAACTCAATCCGCCAGAAGCCGAAGAGTTGGGCTTGGACCCTGCTGC
GTTGCAGGTGGCAAAAGAAGCTAGTTCTCTTATTAATATTTATTTGTGTG
TGCGTTCTGATTGTTTTCGCCAACACGCATCTCTTGGTTCGCGGCAACAT
CCTCTCGGCCTTCCTCTCGAGCCGGCTTAACAAGCATTCGCACGCGGAGA
AGCAGGAGGCGAGGTATCCCGACATCCCGGCCACGACCCCGTCAGTTCCC
CCGGTGCTGAGGCCCACGCACTATCTGCTCAACTACTCCTCCACCCAGCT
GGAGCTGAGCTCGCACTTGAACGGTCTGTCCTCAGACTACAACATATTCG
TCATCTACACGCGGGAGAACTACCACTTGAACCTTAAGTTCGACCTGTTC
GCCCACAGCTTGCTGAAGCACACCAGTGCCCAGCTGCATCTGCACGTGAT
CACGGACAGCGAGAGCCAGCCCTCGGTGCTGGAGATCCTGCAGCGACAGA
TCAGGCGGTTCCGGCGGACGGTCATATACACCATATACGACGTGAAGGTC
TGCTCCAGCATCATACAAGACATAGCCGCCAAGTTGTCCCCGTACTTCAG
CTCAACCCCGAACTCGTACTACAGCGACTCCCTCTTTTTCCTGTCCCTCG
GCCTTCACAGGATCGCCGACAGGAGCCTAAACAGAGCCATTCTGCTAGAT
TGTGATATAGTCTTCCGATCCGATGTCCGACTGCTGTTCAATGAGTTCGA
CAACTTTCTGCCGCACCAGCTGTACGGACTGGCACCGGAACTGACCCCCG
TCTACCGCCACATCCTCTACCGCTATCGCGTGCGCTATCCGAAGACCAGT
TTCGGGAATCCCTACTATCCGATCAACAACGAAGGGGGCAACCAACATAG
CCGTGTCCACCACGGCTATCCAGGCCTGAACTCCGGCGTGGTCCTGCTGC
TCCTAAACCGCATCCGTAACTCAAAGTCCTACCTGGAGAAGCTGACCCAC
TCGGAGGTGCACACCCTGGTCGCCAAGTACTCCTTCAAGGGCCACCTCGG
CGACCAGGACTTCTTCACCCTGCTGGGATACGAGTACCCGAACTTAATCT
ACAGACTGGACTGCATTTGGAACCGCCAGCTGTGCACCTGGTGGAAGGAT
CACGGATACTCACAGATATTCGACGCTTATTTCCGGTGCGAGGGCAATAT
TAAAATGTACCATGGCAACTGTAATACGCGAATTCCAGAATAAAAGCTTT
CTAGACCAT

BS28981.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11388-RA 1377 CG11388-PA 1..1377 17..1393 6885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11388-RA 1639 CG11388-RA 227..1609 12..1394 6900 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24022569..24023951 12..1394 6900 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 11:22:06 has no hits.

BS28981.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-22 14:15:48 Download gff for BS28981.complete
Subject Subject Range Query Range Percent Splice Strand
CG11388-RA 202..1576 17..1391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:00 Download gff for BS28981.complete
Subject Subject Range Query Range Percent Splice Strand
CG11388-RA 232..1606 17..1391 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:26 Download gff for BS28981.complete
Subject Subject Range Query Range Percent Splice Strand
CG11388-RA 232..1606 17..1391 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:26 Download gff for BS28981.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24022574..24023948 17..1391 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:00 Download gff for BS28981.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19910097..19911471 17..1391 100   Plus

BS28981.pep Sequence

Translation from 16 to 1392

> BS28981.pep
MAKNSFKTLISQKHKTFPADLNMYGMKCKSQLLEDQENVTLIINRRNSIR
QKPKSWAWTLLRCRWQKKLVLLLIFICVCVLIVFANTHLLVRGNILSAFL
SSRLNKHSHAEKQEARYPDIPATTPSVPPVLRPTHYLLNYSSTQLELSSH
LNGLSSDYNIFVIYTRENYHLNLKFDLFAHSLLKHTSAQLHLHVITDSES
QPSVLEILQRQIRRFRRTVIYTIYDVKVCSSIIQDIAAKLSPYFSSTPNS
YYSDSLFFLSLGLHRIADRSLNRAILLDCDIVFRSDVRLLFNEFDNFLPH
QLYGLAPELTPVYRHILYRYRVRYPKTSFGNPYYPINNEGGNQHSRVHHG
YPGLNSGVVLLLLNRIRNSKSYLEKLTHSEVHTLVAKYSFKGHLGDQDFF
TLLGYEYPNLIYRLDCIWNRQLCTWWKDHGYSQIFDAYFRCEGNIKMYHG
NCNTRIPE*

BS28981.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11388-PA 458 CG11388-PA 1..458 1..458 2443 100 Plus