BS28982.complete Sequence
488 bp assembled on 2012-04-19
GenBank Submission: KX805693
> BS28982.complete
GAAGTTATCAGTCGACATGGCATTCAAGGTTATCCTCTCCGTTGTCCTGG
TGGCGCTGATCGCCTGCGTCCAGGCGAAGCCCGGCGGTCCGGCGGCCTAT
TCGATTAGTGCGCCCAGCGTTGACCACGCCTCCGTGGGCAGCACTCAGGA
GCATACGGTGAAGGGTCACTACGGCCAGTCCTCCCAGTCGGACTATGCCA
GCCAGGTCCAGACCGCTCACTCGCAGTCCCATGTCCAGCGGTCCAGCATC
AGCAATGACGCCGGACTGGCGCCCGTCGCCGCCCATGGCTACGCAGCTCC
CGGAATCATTGGACACGGCATTGGACTTGCCGCCCCCGCCTATGCTGCCC
CCGCCTACGCTGCTCCTGCATACGCTACGCATCTAGCTGGGCCCGTGGTG
AAGGCCGCCGTCGCCGCACCCGCCCTTGTCCACACATCGGTCTCCGGCCA
TGGTATTCACTATGGCTACTAGAAGCTTTCTAGACCAT
BS28982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42323-RC | 456 | CG42323-PC | 1..456 | 17..472 | 2280 | 100 | Plus |
| CG42323-RE | 780 | CG42323-PE | 1..282 | 17..298 | 1410 | 100 | Plus |
| CG42323-RE | 780 | CG42323-PE | 604..780 | 296..472 | 885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42323-RC | 1009 | CG42323-RC | 70..526 | 17..473 | 2285 | 100 | Plus |
| CG42323-RE | 1333 | CG42323-RE | 70..351 | 17..298 | 1410 | 100 | Plus |
| CG42323-RE | 1333 | CG42323-RE | 673..850 | 296..473 | 890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18423492..18423761 | 27..296 | 1350 | 100 | Plus |
| X | 23542271 | X | 18426269..18426377 | 295..403 | 545 | 100 | Plus |
| X | 23542271 | X | 18426448..18426518 | 403..473 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:34:45 has no hits.
BS28982.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-19 14:05:36 Download gff for
BS28982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42323-RC | 48..503 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:56 Download gff for
BS28982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42323-RC | 48..503 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:43 Download gff for
BS28982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42323-RC | 70..525 | 17..472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:43 Download gff for
BS28982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18423481..18423761 | 17..296 | 98 | -> | Plus |
| X | 18426271..18426376 | 297..402 | 100 | -> | Plus |
| X | 18426448..18426517 | 403..472 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:56 Download gff for
BS28982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18317514..18317794 | 17..296 | 98 | -> | Plus |
| arm_X | 18320304..18320409 | 297..402 | 100 | -> | Plus |
| arm_X | 18320481..18320550 | 403..472 | 100 | | Plus |
BS28982.pep Sequence
Translation from 16 to 471
> BS28982.pep
MAFKVILSVVLVALIACVQAKPGGPAAYSISAPSVDHASVGSTQEHTVKG
HYGQSSQSDYASQVQTAHSQSHVQRSSISNDAGLAPVAAHGYAAPGIIGH
GIGLAAPAYAAPAYAAPAYATHLAGPVVKAAVAAPALVHTSVSGHGIHYG
Y*
BS28982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42323-PC | 151 | CG42323-PC | 1..151 | 1..151 | 770 | 100 | Plus |
| CG42323-PE | 259 | CG42323-PE | 1..147 | 1..151 | 499 | 72.2 | Plus |
| CG42323-PE | 259 | CG42323-PE | 97..259 | 27..151 | 317 | 48.5 | Plus |
